PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0173
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 205aa    MW: 22194.6 Da    PI: 7.6873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0173genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001785107123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k F++   L  H  +H
  Gh_A12G0173  85 YKCSVCDKAFPSYQALGGHKASH 107
                  9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.81E-684110No hitNo description
PfamPF139123.3E-1485109IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.13885112IPR007087Zinc finger, C2H2
SMARTSM003550.006385107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MALEALNSPT MPTPFTNKYD DIDNWKKGKR SKRLRTDSPT TPTTEEEYLA LCLIMLARGS  60
PQGAAHHHPH SSSSSAHPLH LNLSYKCSVC DKAFPSYQAL GGHKASHRKP STAQNPSITT  120
ETNAAGSSGR GGNNNSSSYK SGSVSGVTLS DGGALSQSHR LNFDFDLNMP ACEENEDGRF  180
GHIYAEQEVE SPLPTKKPHV LMVKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.69010.0leaf
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8377020.0JQ837702.1 Gossypium hirsutum cultivar ZM3 ZFP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636508.11e-122PREDICTED: zinc finger protein ZAT10-like
TrEMBLI0B6711e-122I0B671_GOSHI; ZFP
STRINGGorai.008G020700.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-24salt tolerance zinc finger