PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G3014

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 297aa MW: 33567.3 Da PI: 6.2216

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G3014	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.2e-38	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkC ++C lapyfpa+q+k f+n+hklFG+sn++k+lk+l+++++ +am+s+ y+A++r + PvyG++gvi++l q++ ++e +++ Gh_A11G3014 10 ACAACKYQRRKCIPECLLAPYFPADQTKVFQNAHKLFGVSNIVKILKSLDPSQHAEAMRSIKYQANVRDKFPVYGCLGVIRQLYYQIQLREEEFHSVL 107 7****************************************************************************************999998775 PP DUF260 99 e 99 + Gh_A11G3014 108 S 108 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.982	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.3E-37	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MTLKSGTTSA CAACKYQRRK CIPECLLAPY FPADQTKVFQ NAHKLFGVSN IVKILKSLDP 60 SQHAEAMRSI KYQANVRDKF PVYGCLGVIR QLYYQIQLRE EEFHSVLSQL EMYRQYHHEV 120 PSQLELGMAP PTNGLNFLTA VSDMPVSMQH SYSNSNNIGY CSSYVDSKDH NNNNNNSNSN 180 SNNNNNNNSL WIQHPFLATN NSSSSNSNEN NPLMAIQSQL LVSDMQPLVK QHEVVQDYDE 240 LHPFFDTIDD RQSFIHSKEP YDSSCEDSAK ETTQAIELVP NNELKNAAAC FSLTSVH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-29	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-29	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614899	0.0	JX614899.1 Gossypium hirsutum clone NBRI_GE58613 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488173.1	0.0	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	3e-60	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A0D2S693	0.0	A0A0D2S693_GOSRA; Uncharacterized protein
STRING	Gorai.007G034800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-55	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]