PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2337
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 291aa    MW: 31804 Da    PI: 8.4773
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2337genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.9e-17218252135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Gh_A11G2337 218 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 252
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.105.4E-14211249IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.569212248IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-14212266IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15213276No hitNo description
CDDcd002021.02E-11217264No hitNo description
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
PfamPF003203.5E-15218252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDFLRNVSVS GEYHQPEQVL SSPCSKLGAS IDDLFPTQNT EVDVSLEWLS IFVEDCLSST  60
GNCIPVAATA APNVTTTATT TTTKPTNSAK KPHQITPPSL QKIVVPGKAR SKRKRVSTTL  120
SKTKNNPFCS WYQSLQLPNS DPLLLQQSCW LADSELIMPK KEDDNSSGMV GYSEVEESTK  180
KEGMEEEKAA AAAAAVVSKE SIGDGNNNGV NQQQPRRCSH CLAQRTPQWR AGPLGPKTLC  240
NACGVRYKSG RLLPEYRPAK SPTFVSYLHS NSHKKVMEMR MSLLSSIPSE Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.100520.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935018e-62BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668175.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A1U8HQ690.0A0A1U8HQ69_GOSHI; GATA transcription factor 5-like
STRINGGorai.007G287800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17095911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-34GATA transcription factor 4