PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2258

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 326aa MW: 36810.2 Da PI: 10.4217

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2258	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.7	8.5e-32	259	316	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Gh_A11G2258 259 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGEHNHS 316 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.7E-18	210	255	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.3E-34	245	316	IPR003657	WRKY domain
PROSITE profile	PS50811	30.194	252	318	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	255	316	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	257	317	IPR003657	WRKY domain
Pfam	PF03106	2.6E-27	259	315	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MFLSMEKVEE ANKAAIESSN RVLSLLSLPK DQLQYSNLMM KTSEAVFKFK KVVSLLNNDL 60 SHSRVRKSKM FRSSSPQNIF LESPNCRTIL SPKPLQVYPS NLFQKPPLEV KPSQDFSFVH 120 LQQQQQQMQQ RLQFQQQQQQ MKYHADMVFG KSNSGINLKF DGSSCTPTMS SAGSFVSSLS 180 LDGSVANLDG NSFHLIGMPH HFGHISQHSR KRCSGKGQDG SMKCGTSGKC HCSKRRKLRI 240 KRSIKVPAIS NKVADIPPDE YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERCLE 300 DPSMLIVTYE GEHNHSRLLS THPAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	255	315	12	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031114	0.0	KF031114.1 Gossypium hirsutum WRKY transcription factor 100 (WRKY100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016669307.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-115	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A1U8HTF2	0.0	A0A1U8HTF2_GOSHI; probable WRKY transcription factor 74
STRING	Gorai.007G278400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	2e-99	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]