PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1801
Common NameWRKY42
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 345aa    MW: 37859.6 Da    PI: 9.6965
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1801genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31274331359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Gh_A11G1801 274 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHS 331
                  99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.6E-17224270IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.5E-33260331IPR003657WRKY domain
PROSITE profilePS5081130.963267333IPR003657WRKY domain
SuperFamilySSF1182903.79E-27269331IPR003657WRKY domain
SMARTSM007741.3E-38272332IPR003657WRKY domain
PfamPF031062.9E-27274330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVELMMSCR NGDSFAAKME ENAVKEAASG LESVEKLIRL LSQTQQQQQT NSNNQEKYQA  60
SSISTTSNSL DLEMDCKAEA DAAVSRFKRV ISLLGRTRTG HARFRRAPVQ PDQEQETKVY  120
YATPIQQIPP PVTTAYPLPP PPPPPPHHHH RDFMTVKTGG LERIDSSKTI NFSYSSAGNS  180
FLSSLTGDTD SKQPCSSSSA FQITNFSQVS SAGKPPLSSS SSFKRKCSSD NLGSGKCTSG  240
SSGRCHCSKK RKLRSKRVVR VPAISLKMAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS  300
VRGCPARKHV ERALDDPSML VVTYEGEHNH SLSVAETTNL ILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212693321476Probable WRKY transcription factor 4
2lex_A2e-212693321476Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697970.0KF669797.1 Gossypium hirsutum WRKY transcription factor 42 (WRKY42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313834.10.0probable WRKY transcription factor 15
SwissprotO221762e-92WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A1U8IYK70.0A0A1U8IYK7_GOSHI; probable WRKY transcription factor 15
STRINGGorai.007G216700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.18e-75WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]
  3. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  4. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]