PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1614

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 279aa MW: 30979.5 Da PI: 5.0689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1614	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	40	89	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f eL l ++ +K++K++iL +++ +k+L Gh_A11G1614 40 RKVQKADREKLRRDKLNEQFVELGNTLDPD----RPKNDKVTILVDTTQMLKDL 89 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.341	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-11	40	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.76E-6	40	93	No hit	No description
SuperFamily	SSF47459	1.05E-11	40	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-5	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDHQWKPNDF SMPAAADLDP SNPEPRQRQE MEATDPIAAR KVQKADREKL RRDKLNEQFV 60 ELGNTLDPDR PKNDKVTILV DTTQMLKDLT AEVNRLRAEC SSLTEESREY QQRLSVMFPW 120 TGIEPSVVVA PPYSYPAPLH VPTGPIAMLP SLQPYPYFLN HGPGAVANPC STYIPYSMEQ 180 PSSQPTSSSH LSFQRDCRSK PMDDQGGSNR DSCDGSNDVV TELELKIPGS STNQGLSAVE 240 TKGKQTEERS MVNSISSSRI QGPRDSASNN LDEVSKSKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016696640.1	0.0	PREDICTED: transcription factor bHLH121-like
Swissprot	Q9LT23	4e-45	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2P5XMI0	0.0	A0A2P5XMI0_GOSBA; Uncharacterized protein
STRING	Gorai.007G194400.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-46	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]