PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A11G1301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 547aa MW: 59543.5 Da PI: 7.0299 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7e-09 | 352 | 399 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq Gh_A11G1301 352 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 399 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-17 | 346 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-10 | 346 | 403 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 348 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.428 | 348 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-6 | 352 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-10 | 354 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 547 aa Download sequence Send to blast |
MENQFFVNAG IQSPAPPLHF GSSMPMSDWQ SLSSAMEIQS QDCFPTPNWE KPTDYSLQFE 60 SALSSMVSSP AASNCNVASE SLIIRELIGK LGSIGNGGEI PPHSQPLLSS YINVNNSSNT 120 SCYSTPLNSP PKLNLTMVDS LVKEKLPAMG LNSSVADFSA DPGFAERAAK FSCFGSRSFN 180 GRTSQFGPKD NTEFAAYRSN PLAANAKLPR VSSSPSIKAM VSQGTTTNKN TPLQDRSELA 240 NSQEESTVSE QNPNGEPGLK ASNSRKRKAV PKAKTKDTSS SPSANASKVQ VTEPNEASNE 300 KRCKLSDSNG NENGSAKAEE DAKGDKANNT KAPEPPKDYI HVRARRGQAT DSHSLAERVR 360 REKISERMKL LQNLVPGCNK VTGKALMLDE IINYVQSLQR QVEFLSMKLA SVNTRLDFNV 420 ESLMSKDIFQ PNNTLQQPIF PINSSASTFF GHQPQQNPAL HSNMSNGTMT QCSVDPLDTA 480 ICPKLNTHLP QINQFVETVP PQYPTFCEGD LETIVHMGFG QNQSQDMALH SQNFQGSNQV 540 SHMKVEL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.22622 | 0.0 | boll |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016708360.1 | 0.0 | PREDICTED: transcription factor bHLH62-like isoform X1 | ||||
TrEMBL | A0A1U8L120 | 0.0 | A0A1U8L120_GOSHI; transcription factor bHLH62-like isoform X1 | ||||
STRING | Gorai.007G157700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-134 | bHLH family protein |