PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1163
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 303aa    MW: 32009.2 Da    PI: 6.6396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1163genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.8e-10152196554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Gh_A11G1163 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 196
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-15145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-15149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANNPNESPA DDFLEQILGL PHFAPTETGL AGPDGRLSGN ATTAGAPMLL QLSSGGGTGH  60
IGAIGGGGGG AFHGQVFPLG LSLEQGKGGF LKPEEASGSS KRFRDEVVDG RAFSVKNVFH  120
GQPVPATVAA GPHPPPMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT  180
DRAAMLDEIV DYVKFLRLQV KVLSMSRLGA AGAVAPLVTD LPLSSVEDES GEGGRSQPAW  240
EKWSNDGTER QVAKLMEEDV GAAMQFLQSK ALCVMPISLA TAIYHTQSPD TSSVVKPETN  300
PPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.90720.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710576.10.0PREDICTED: transcription factor UNE12-like isoform X2
SwissprotO227681e-134UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1U8L7K10.0A0A1U8L7K1_GOSHI; transcription factor UNE12-like isoform X2
STRINGGorai.007G141800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-115bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]