PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0909
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 495aa    MW: 55189.4 Da    PI: 5.2625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0909genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12314359454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Gh_A11G0909 314 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINDL 359
                  799***********************6.....4****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-5126202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.971310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17311372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-13313363No hitNo description
Gene3DG3DSA:4.10.280.102.0E-16314375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-10314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEDLIISPSS SSSLVSFSQE TPSPILQQRL QFVIQSQQDL WAYAILWQTL NDDLGRLFLA  60
WGDGHLQCTK DASPRLSSGF HSERTKVIKG IQALIGDQHD IDLSMIDGTD ITDVEWFYMM  120
SMARSFSAGE GIPGKALSTG SLVWLTGAHE LQFYNCERAR EAQMHGLETL VCIPTSCGVL  180
ELGSSEIIRE NWGLVQQVKS LFESDLIGLV PKQSTPPNLT PASVQFLNRN ISFADIGIIA  240
GVQEEDGASQ DIKTKQEHNN NQTKKDSSKL GQPSYVDSEH SDSDFPLLAM NNVEKRTPKK  300
RGRKPGLGRE TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVSYINDLK  360
AKIDELESQL QRECKKVKVE MVDTMDNQST TTTTTSEEEQ QAARPSYSSP GTGSGIELEV  420
KIMVNDAMIR VHSENVNYPA ARLMGALRDL EFQVRHASMS SVNDLMLQDI VVRLPDGLRT  480
EEGLKSALLR RLDLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-33262029192Transcription factor MYC3
4rqw_B6e-33262029192Transcription factor MYC3
4rs9_A6e-33262029192Transcription factor MYC3
4yz6_A6e-33262029192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.24300.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732092.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8MZ130.0A0A1U8MZ13_GOSHI; transcription factor MYC2-like
TrEMBLA0A2P5WX220.0A0A2P5WX22_GOSBA; Uncharacterized protein
STRINGGorai.007G111800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.18e-68NACL-inducible gene 1