PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0885
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 187aa    MW: 20980.3 Da    PI: 6.5074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0885genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-173685255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Gh_A11G0885 36 VYRGIRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLRG 85
                 69****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-303694IPR001471AP2/ERF domain
PROSITE profilePS5103223.5253693IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-213695IPR016177DNA-binding domain
PfamPF008479.6E-123685IPR001471AP2/ERF domain
SMARTSM003806.4E-373699IPR001471AP2/ERF domain
CDDcd000184.54E-303794No hitNo description
PRINTSPR003672.4E-133748IPR001471AP2/ERF domain
PRINTSPR003672.4E-137595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQASYTEDD LNSSSTTTSE THQKHISKRG STRHAVYRGI RKRRWGKWVS EIREPRKKSR  60
IWLGSFPVPE MAAKAYDVAA FCLRGSKALL NFPDEVEDLP RPSTCTARDI QAAAAKAAHS  120
VVSWNKSEVS AEEGNGHSGD DFWGEIELPE LLNSSCQWNS CGWTFAADSA WLEGEAQQQQ  180
HYFLACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1834951274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.254501e-78ovule
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692957.11e-138PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-60ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1U8JRQ31e-137A0A1U8JRQ3_GOSHI; ethylene-responsive transcription factor ERF023-like
STRINGGorai.007G109400.11e-120(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.15e-62ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]