PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0868
Common NameWRKY90
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 332aa    MW: 37329.7 Da    PI: 5.7779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0868genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.42.9e-28110170259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrKYGqK + gs+fpr+YYrCt++   gC + k+v++s++dp+++e++Y+g+H+++
  Gh_A11G0868 110 DDGFCWRKYGQKAILGSNFPRGYYRCTHRhsqGCLAIKQVQKSNDDPTIFEVKYRGRHTCN 170
                  8***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26100171IPR003657WRKY domain
PROSITE profilePS5081122.355104172IPR003657WRKY domain
SuperFamilySSF1182901.31E-24107171IPR003657WRKY domain
SMARTSM007743.6E-38109171IPR003657WRKY domain
PfamPF031061.3E-24110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEQEALLNEL KEGREVTNLL MKHLHLPSSH QTRLVLIEKI LGSYENALSI LNCNGLVVET  60
KPSLSTMESL PSIDHSSPDK RDVYKKRKTS SGWTEQLRVC SGTSLDNPID DGFCWRKYGQ  120
KAILGSNFPR GYYRCTHRHS QGCLAIKQVQ KSNDDPTIFE VKYRGRHTCN QTSHFAATYV  180
SVSTESENEG NYSRKRQHHL EAKQKQAQQA FSSFGSGLMV KTEDLDNRED IFPSFPFPVE  240
SEQVKNGSFV EALMENDIMG NISPAFISPA TSESNKFSMS PCHMGSFESD LTDIISAPTS  300
VTNSPIGDLD ISSLDKLEFD PSFPFDNPEF FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18109169868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.92010.0leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311110.0KF031111.1 Gossypium hirsutum WRKY transcription factor 90 (WRKY90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313951.10.0probable WRKY transcription factor 46
TrEMBLA0A1U8JRR50.0A0A1U8JRR5_GOSHI; probable WRKY transcription factor 46
STRINGGorai.007G107300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-59WRKY DNA-binding protein 46