PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0834
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 641aa    MW: 72125.6 Da    PI: 8.934
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0834genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31562620159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Gh_A11G0834 562 LDDGYRWRKYGQKAVKNSIHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 620
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18201.3E-3482289IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534743.28E-2488292IPR029058Alpha/Beta hydrolase fold
PRINTSPR007935.2E-8121129IPR002410Peptidase S33
PfamPF005614.3E-13121277IPR000073Alpha/beta hydrolase fold-1
PRINTSPR007935.2E-8151162IPR002410Peptidase S33
PRINTSPR007935.2E-8211225IPR002410Peptidase S33
Gene3DG3DSA:3.40.50.18201.3E-34335336IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.3E-34395448IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:2.20.25.801.4E-32548620IPR003657WRKY domain
SuperFamilySSF1182906.8E-28554621IPR003657WRKY domain
PROSITE profilePS5081128.966557622IPR003657WRKY domain
SMARTSM007741.0E-37562621IPR003657WRKY domain
PfamPF031066.5E-25563620IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008233Molecular Functionpeptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MLKIHAPPIL IKALLSFDLS FSSSISATLS PLQSARLHRF RLRRTSIRAL VTMSVPKSDS  60
TGQSMTEHVA GNWYSVPGLR LRDHRFMVPL DYKNREASSK ISIFAREIVA VGKEEQPMPY  120
LLYLQGGPGF ECPRPTEASG WILKACEEFR VVLMDQRGTG LSTPLTPSSM QQIKSAPKLA  180
DYLTHFRADS IVNDAEFIRV RLVPEARPWS VLGQSYGGFC GVTYLSFAPQ GLKQVLLTGG  240
IPPIGDGCTA DSVYRACFEQ IIHQNEKYYK RFPQDIEIVR DVVTFLAESE AGGVPLPSGG  300
ILTPRGLQFL GLSGLGSSAG FERLHYMFER AWDPILVPGA PKQISSYFLN TYENWVSFDT  360
NPLYAILHES IYCQGASSRW SAHRVRADHE SKFNAIKAAK EGRPVLFTGE MIFPWMFDEV  420
KALRPFKEAT QLLAEKEDWP PLYDVTALNN NKMDGQESNP PPPLLSPLNV PFLFPTSLPS  480
SSLHPPLQTQ NILPDIDWVS LLSGHENKLM IESGSNNLMS ENGVDHHQDA KGANMDKRKG  540
SKIKKTSRPR FAFQTRSEDD ILDDGYRWRK YGQKAVKNSI HPRSYYRCTH HTCNVKKQVQ  600
RLSKDTSIVV TTYEGIHNHP CEKLMETLTP LLRQMQFLSS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-23554619974Probable WRKY transcription factor 4
2lex_A3e-23554619974Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698130.0KF669813.1 Gossypium hirsutum WRKY transcription factor 49 (WRKY49) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710345.10.0PREDICTED: proline iminopeptidase-like isoform X1
TrEMBLA0A1U8L6W50.0A0A1U8L6W5_GOSHI; proline iminopeptidase-like isoform X1
STRINGGorai.007G103500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.12e-54WRKY DNA-binding protein 24