PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0796
Common NamebHLH123A
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 631aa    MW: 71270.8 Da    PI: 5.2189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0796genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000174434751855
                  HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++f+ L++++P+ +        +K +iL+ +++Y+k+L+
  Gh_A11G0796 443 EKFQVLKSIVPSiD------EIDKESILKDTIKYLKELE 475
                  79**********66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-5415195IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.35E-4433479No hitNo description
Gene3DG3DSA:4.10.280.105.5E-8433489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-8433500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MANVVKNQVG VPENLRKQLA VAVRSIQWSY AIFWSLSATQ QGEIQWGDGY YNGDIKTRKT  60
VQALELKADK IGLQRSEQLR ELYESLLEGE TDQNKRPSAA LSPEDLSDTE WYYLVCMSFV  120
FTPGQGLPGK AFANGETIWL CNAQYADSKI FSRSLLAKSA SIQTVVCFPY LGGVIELGVT  180
ELVPEDPNLL QHIKASLLDF SKPVCSEKST SAPHNADDDK DPICAKVDHE IVDLLDLENL  240
YSPAKEIKFD HERFNELHES IKEDFNISSP DECSNGFEQN HQMDDSFMLE DVNGVASQVQ  300
SWHFMDDDFS IQEKAAISSP KRGSVSHSHL KEFQQGNHTI LSSLDLEVDD DLHYKRTVSA  360
ILSTSNWLIE SPSFTTCGYK SSFISWKKEG MENFHRPRLH QNIFKKILFA VPLMHRGKCS  420
LGKLENNIDA TGHVLPEKRR EEEKFQVLKS IVPSIDEIDK ESILKDTIKY LKELEARIEE  480
LESCKNSMEF EARPRRNCLD VVEQTSDNYE NRKVDSVKKP WINKRKACDI DESLHESGSE  540
LNRTIPKDGL APAVKVSIKE LEVIIEIKCP CREFLLLDIM EAINNLHLDA HTVQSCTLDG  600
LVTLTLKSKF RGAAIAPAGM IKQALERVAA K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-18132017195Transcription factor MYC3
4rqw_B4e-18132017195Transcription factor MYC3
4rru_A4e-181319346227Transcription factor MYC3
4rs9_A4e-18132017195Transcription factor MYC3
4ywc_A4e-181319346227Transcription factor MYC3
4ywc_B4e-181319346227Transcription factor MYC3
4yz6_A4e-18132017195Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988650.0KP698865.1 Gossypium hirsutum basic helix-loop-helix protein 123A (bHLH123A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708517.10.0PREDICTED: transcription factor MYC1-like isoform X1
TrEMBLA0A0G2UQM70.0A0A0G2UQM7_GOSHI; Basic helix-loop-helix protein 123A
STRINGGorai.007G099300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-169bHLH family protein
Publications ? help Back to Top
  1. Yan Q, et al.
    The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.
    PLoS ONE, 2015. 10(5): p. e0126558
    [PMID:25992947]