PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0690
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33399.6 Da    PI: 7.1053
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0690genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-18140194256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq  +Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Gh_A11G0690 140 RKKLRLSKEQSLVLEETFKEHSTLNPKHKLALAMQLNLRPRQVEVWFQNRRARTK 194
                  788899***********************************************98 PP
2HD-ZIP_I/II125.32.7e-40140229191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
  Gh_A11G0690 140 RKKLRLSKEQSLVLEETFKEHSTLNPKHKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVQELR-AL 229
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.2E-291108IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.8E-18119194IPR009057Homeodomain-like
SuperFamilySSF466893.55E-18125197IPR009057Homeodomain-like
PROSITE profilePS5007116.779136196IPR001356Homeobox domain
SMARTSM003892.2E-14138200IPR001356Homeobox domain
CDDcd000861.49E-14140197No hitNo description
PfamPF000461.4E-15140194IPR001356Homeobox domain
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
PfamPF021837.0E-12196230IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25196239IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDDKDDSLGL SLSLGCAQNQ PSLKLNLMPL ALPCMQNLQQ RNIWSELFQS SGIFVIDRMH  60
ADGQLETRSV AGGIDVNQAP ALTECEEEDG VSSPNSTVSS IGGKRNGRDP VCHETEAERP  120
SCSRTSDDED GVGAGDDASR KKLRLSKEQS LVLEETFKEH STLNPKHKLA LAMQLNLRPR  180
QVEVWFQNRR ARTKLKQTEV DCEYLKRCCD NLTEENRRLQ KEVQELRALK LSPQLYTHIN  240
PPTTLTMCPS CERVAVASSS SLSLPASSAP NSKHQRPVPA SSWAALPLPV THRTFNASAS  300
RP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144SRKKLRL
2188196RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.234060.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695326.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_017614465.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466027e-98HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1U8JYH30.0A0A1U8JYH3_GOSHI; homeobox-leucine zipper protein HAT3-like
STRINGGorai.007G086600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-89homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]