PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0343
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27683.8 Da    PI: 10.4241
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0343genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.7e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien +nrqvtfskRrng+lKKA+ELS+LCdaeva++ifss+gk+y ++s
  Gh_A11G0343  9 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSSGKVYQFAS 59
                 79***********************************************86 PP
2K-box52.91.6e-1813519936100
        K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  Rhl Ged+  L +++L+qLe+qL+ +++++Rs+K +++ ++   l+++ k+lqeen +L+k+l+e
  Gh_A11G0343 135 RHLSGEDILALGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKQLQEENSRLHKRLKE 199
                  9************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
CDDcd002652.00E-39270No hitNo description
SuperFamilySSF554554.19E-32276IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.48586203IPR002487Transcription factor, K-box
PfamPF014861.5E-15135197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKVQLKR IENPTNRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSS SGKVYQFASH  60
DMDRTVAKYR REVGLPDSSN PQFRTMEFWR SEIDELNRSI NTLEARLKYV QLISQYLNIY  120
IFHVFRTSNV FDFCRHLSGE DILALGMRDL KQLERQLKIG VERVRSRKRR IVSDHATLLK  180
RRHKQLQEEN SRLHKRLKEL QDGNISSGLV GENACTMFHQ RIVHEEDFHN ETGLPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-25169169MEF2 CHIMERA
6byy_B5e-25169169MEF2 CHIMERA
6byy_C5e-25169169MEF2 CHIMERA
6byy_D5e-25169169MEF2 CHIMERA
6bz1_A4e-25169169MEF2 CHIMERA
6bz1_B4e-25169169MEF2 CHIMERA
6bz1_C4e-25169169MEF2 CHIMERA
6bz1_D4e-25169169MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364520.0HM236452.1 Gossypium hirsutum MADS36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709013.11e-146PREDICTED: MADS-box transcription factor 23-like isoform X2
TrEMBLA0A1U8L6J91e-145A0A1U8L6J9_GOSHI; MADS-box transcription factor 23-like isoform X2
STRINGGorai.007G043400.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.18e-43AGAMOUS-like 6