PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0103
Common NameWRKY57
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 349aa    MW: 37456.5 Da    PI: 4.945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0103genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15.1e-30149207259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ +p+v+++tY+g+H+h+
  Gh_A11G0103 149 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLEPNVFIVTYTGDHTHP 207
                  699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-30134209IPR003657WRKY domain
PROSITE profilePS5081132.019143209IPR003657WRKY domain
SuperFamilySSF1182905.49E-26143209IPR003657WRKY domain
SMARTSM007744.0E-36148208IPR003657WRKY domain
PfamPF031061.2E-25150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAAGDWDLYA VVRSCTSATN TSTSAVSGNY FSNGNNDSWR EDPLACLASL TFEEEDDPFT  60
FPNLKKSGSL QDSYEPLLSD PTTTIISTNR GTDPSSSRSI NGVSSGQHHQ WQQQFIKPLN  120
TQQQLKKPRK RKNQQKRTVC HVTADNLSSD PWAWRKYGQK PIKGSPYPRN YYRCSSSKGC  180
SARKQVERSN LEPNVFIVTY TGDHTHPRPT HRNSLAGSTR NKLSTFQRAA APATASCSTS  240
PTTVSAPEGT AADLNNNAGD NGDDDDESAD NIAPEMSPEA VNDDEDDLLI PDVHVDDDLF  300
KGLEELVGDA GGGSSSITGN GLGNSSAFGD KFSSWGTGSS ASAASGGGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-181502101880Disease resistance protein RRS1
5w3x_D5e-181502101880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131KKPRKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697870.0KF669787.1 Gossypium hirsutum WRKY transcription factor 57 (WRKY57) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610490.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A1U8L2T50.0A0A1U8L2T5_GOSHI; probable WRKY transcription factor 27
STRINGGorai.007G013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-52WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]