PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0102
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 300aa    MW: 33079.2 Da    PI: 9.2487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0102genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-133983147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
      Gh_A11G0102 39 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 83
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-163389IPR009057Homeodomain-like
PROSITE profilePS5129414.7463488IPR017930Myb domain
TIGRFAMsTIGR015571.0E-183786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-63879IPR009057Homeodomain-like
SMARTSM007172.7E-103886IPR001005SANT/Myb domain
PfamPF002491.1E-103983IPR001005SANT/Myb domain
CDDcd001676.65E-84184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MALPGLGPFS TAETAASTVS SSEDPNKKIR KPYTISKSRE SWTEPEHDKF LEALQLFDRD  60
WKKIEAYVGS KTVIQIRSHA QKYFLKVQKS GTSEHLPPPR PKRKAAHPYP QKASKNAVLG  120
QPQVSEPLQS PAALLDTGYV LRSNPSLMLA DPVTRAAASP QTNNAQTISF AQDKKGPGMA  180
NNSCSSTEST RKTTEVGDTT DQGNHGHALR VLPDFAQVYS FIGSVFDPNT KGHMQKLKKM  240
DPIDVETVLL LMRNLSINLT SPDFEDHRRL LSSYEIDTET NNINSGACEA VDNNQSKRIT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708440.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W31e-126RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1U8L1A10.0A0A1U8L1A1_GOSHI; protein REVEILLE 6-like isoform X1
TrEMBLA0A2P5W9A60.0A0A2P5W9A6_GOSBA; Uncharacterized protein
STRINGGorai.007G013200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-111MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]