PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G2215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 255aa MW: 28312.5 Da PI: 10.0677 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.3e-38 | 32 | 89 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ +kcprC+s ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+ Gh_A10G2215 32 HTPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKR 89 56789**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.2E-33 | 34 | 89 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-25 | 34 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.742 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKQNQQQGRR LKPLMAAEHH HHRHQQQQQQ QHTPQKCPRC ESLNTKFCYY NNYSLSQPRY 60 FCKACRRYWT QGGTLRNVPV GGGCRKGKRP KLSSSGDDDN PTRQSTQRNL ISPPVQLQAK 120 ESDSLVSSSA AMGSYYPASG FLSSLAAIQP MNQPQCLKQP LNQALRIGGG DLGSSTSNLG 180 LLQGYGVPFL GSQNHQQTQF QWPAAGNSYY QQNWHQNFIN EAVTSTAKVT NTSNSKTASS 240 LSPNQWPDLP AYGAP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964335 | 6e-87 | JX964335.1 Gossypium hirsutum clone NBRI_TRANS-604 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016710999.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.4-like | ||||
TrEMBL | A0A1U8LCV2 | 0.0 | A0A1U8LCV2_GOSHI; dof zinc finger protein DOF4.4-like | ||||
STRING | Gorai.011G029200.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15986 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 1e-32 | Dof family protein |