PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1739
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 713aa    MW: 80627.5 Da    PI: 8.8132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1739genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09550602155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ +h  + r+RR++i + ++ Lr llP+       +K s ++ +  Av YIk+L+
  Gh_A10G1739 550 KKSMHRGIGRQRRQEIATLYASLRNLLPPkY---IRGKCSISDEVDGAVSYIKYLK 602
                  678999999********************77...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.105.4E-7339IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520584.76E-13777IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520584.76E-13160371IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.4E-7184357IPR032675Leucine-rich repeat domain, L domain-like
CDDcd000831.39E-6547605No hitNo description
Gene3DG3DSA:4.10.280.102.5E-7547617IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-10548618IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.985549601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6550601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MKLLSHVGKL DNLEELDLDE TEIISIPIGI GKLVKLRVLK VCIYGQTNFS KRKQLPSNMV  60
LHPGMISKLS CLIELSIDVD PSDKWWHDSV EEVVKGVCNL EGLRSLCLYL PNYQLLDYTS  120
FIYPSLSCFR FTVGHHKRRT ISRVPHEVEA QFTKWDKCLK FVNGENIPFQ VRKVLKFTSS  180
FFLDRHENAW SLSEFGNENM VKLKFCLLVD CNKMETIIGG AEVETILESL QYLSIHYMKN  240
LTSIWKGPTR SGCMSKLKFL ALHTYPKLIN IFSNVLLKSF VNLEEIIVED CPQVTSLVGH  300
ISARAMSDAF LPSLKRLFLL YLPELVSISN GQYIAPKLEM IGFYNCPMLK ILSKRELSSK  360
TLKKIKGENQ WWEGIKWKET DWETMPDYLM HIFSPINIEK DVMTQLVEDR DVFEALTQNE  420
GQQSDTALCT RKLVDNYAQQ KGQWADCMVK SVPSPCSPIL SSLTRPYLPI TPPLNVKHTR  480
RFSKRQLSNL VSYPSHNEQN KSSEKMSLGL GFSSPLVNRC CPAVVSGSRG RQQKLLASGK  540
RENSNDDDKK KSMHRGIGRQ RRQEIATLYA SLRNLLPPKY IRGKCSISDE VDGAVSYIKY  600
LKKRIDGLSG KRDELKKVWG NSSGFHQGMS MSCIEAFPSS AVVRQSLDGV EIVISDSVGA  660
QALTLSKVLQ QLLEEGLDVV NCVSSRTDGA LIYTINYETT NLPSAIVYLA ATG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676856.10.0PREDICTED: uncharacterized protein LOC107896255 isoform X1
TrEMBLA0A1U8IFD00.0A0A1U8IFD0_GOSHI; uncharacterized protein LOC107896255 isoform X1
STRINGGorai.011G226600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM802034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-32bHLH family protein