PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G1439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 273aa MW: 29286.9 Da PI: 8.5863 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.1 | 1.1e-11 | 28 | 52 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG++C+F+H++ Gh_A10G1439 28 KANCIYYLRTGFCGYGSKCRFNHPR 52 579********************96 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 74 | 98 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++r GtCk+G++Ck++H++ Gh_A10G1439 74 QPVCQYYMRKGTCKFGSSCKYHHPK 98 689********************96 PP | |||||||
3 | zf-CCCH | 29.9 | 9.3e-10 | 146 | 168 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ++++ G Ck+G CkF H Gh_A10G1439 146 PPCIHYSQHGVCKFGVACKFDHH 168 79********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.324 | 25 | 53 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-7 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 28 | 52 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-6 | 31 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.155 | 71 | 99 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-7 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 76 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.235 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.063 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-7 | 146 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-5 | 146 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-4 | 147 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MLQVIESKPV WRLGLGGESE SYPERPNKAN CIYYLRTGFC GYGSKCRFNH PRDRTGVMAA 60 ARVDVGEYPE RVGQPVCQYY MRKGTCKFGS SCKYHHPKQG GCTSANSTFC TYIISQDAIT 120 IWPFVSTIWS CNGKFSPDAR LICGAPPCIH YSQHGVCKFG VACKFDHHMG TLSYSPSASS 180 PTDMPVAPYP IGSTGGTLAP SSSSSDLRPE QLSRSNKESA PPIMSSSVSA SSESVGSIFS 240 KGGLVHHSIE QQASQSSFGS GNNSSTTKAQ ASS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613884.1 | 8e-73 | PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X2 | ||||
TrEMBL | A0A2P5YC25 | 2e-75 | A0A2P5YC25_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G188400.1 | 4e-68 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 2e-45 | C3H family protein |