PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G0884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WOX | ||||||||
Protein Properties | Length: 289aa MW: 32200.4 Da PI: 6.508 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.4e-20 | 32 | 93 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psa+++++++++l +++ ++V++WFqN++a+e++ Gh_A10G0884 32 STRWTPTTDQIRILKDLYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 93 58*****************8678*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.3 | 6e-37 | 31 | 95 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Gh_A10G0884 31 SSTRWTPTTDQIRILKDLYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 95 789***************9779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-12 | 11 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.317 | 28 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-5 | 30 | 98 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.3E-17 | 33 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 33 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.54E-7 | 33 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEPQHQHQQP HPNDDNSSGG SGKGSFLCRQ SSTRWTPTTD QIRILKDLYY NNGVRSPSAD 60 QIQRISARLR QYGKIEGKNV FYWFQNHKAR ERQKKRFTST PDILPMQTPI LANATRKPDD 120 SLHNHKYPTI TPGYAPSSPP STGVLTVGQI GHYGYGSMTM EKSFRDCSIS ACGSSSGGAS 180 HNLGWVGMDP AYTTSSYAFF DKKKLFGEEQ EGDEEEEEEE GAAVAPHIET LPLFPMHGED 240 INAFCSNMKP QSADSCYSSW YRSDDGYTAS RASLELSLNS YNARSQDSI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 6e-78 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016676755.1 | 0.0 | PREDICTED: protein WUSCHEL-like | ||||
Swissprot | Q8LL11 | 2e-94 | WUS_PETHY; Protein WUSCHEL | ||||
TrEMBL | A0A1U8IF18 | 0.0 | A0A1U8IF18_GOSHI; protein WUSCHEL-like | ||||
TrEMBL | A0A2P5QJ93 | 0.0 | A0A2P5QJ93_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G098600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5244 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 5e-54 | WOX family protein |
Publications ? help Back to Top | |||
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