PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A10G0323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 272aa MW: 29628.6 Da PI: 4.9704 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.4e-29 | 76 | 134 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ +p++++itY+ eHnh Gh_A10G0323 76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVNPTMLVITYSCEHNHA 134 69*************************998****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-30 | 70 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.963 | 70 | 136 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-25 | 73 | 136 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-34 | 75 | 135 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 77 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDGGGSSSNS FRKVRNPFVT DQELEESDNV SSVTGAESPP PSTTKKGKRS MQKRVVSVPI 60 KDVEGSRLKG EGAPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVNP 120 TMLVITYSCE HNHAWPASRH NNTSAKQAAA AAGEASESPT KSTTAVKHDP STSQPDTEPD 180 SGMEDGFACL TEDSILTTGD EFAWFGEMET TSSTVLESSL FSERDNSEAD DTAVIFPMRE 240 EDESLFADLG ELPECSFVFR HQRNVGPQVG IC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-19 | 53 | 136 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-19 | 53 | 136 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.25701 | 0.0 | ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031107 | 0.0 | KF031107.1 Gossypium hirsutum WRKY transcription factor 81 (WRKY81) mRNA, complete cds. | |||
GenBank | KF669793 | 0.0 | KF669793.1 Gossypium hirsutum WRKY transcription factor 91 (WRKY91) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647328.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 2e-80 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0B0PC40 | 0.0 | A0A0B0PC40_GOSAR; Putative WRKY transcription factor 65-like protein | ||||
STRING | Gorai.011G037500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5383 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-71 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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