PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G0219
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 472aa    MW: 52690.6 Da    PI: 10.5446
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G0219genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07841236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                      rW t+E++ll  av ++G ++W+++a+++  +R+
      Gh_A10G0219  8 RRWGTWEELLLGGAVLRHGARDWNLVASELR-TRS 41
                     59*****************************.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002498.5E-6842IPR001005SANT/Myb domain
CDDcd001670.0012956No hitNo description
SuperFamilySSF473703.66E-18258372IPR001487Bromodomain
SMARTSM002977.2E-18262370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.5E-16264372IPR001487Bromodomain
PfamPF004398.4E-13276354IPR001487Bromodomain
PROSITE profilePS5001410.291281351IPR001487Bromodomain
CDDcd043693.28E-15283361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGTDMITRRW GTWEELLLGG AVLRHGARDW NLVASELRTR SISPFDFTPE VCKAKYEDLR  60
QRYSGSTAWF EELRKQRMEE LRRALEKSED SIGSLESKLE TLKAEKGDDS RVGYDSSQTE  120
SALPCVRSEG VEFSSKDTYK DGLSAGSFTQ EAETKWAPDC PVPVAVPAEE MDLKPGNSPT  180
SAEREKISTI DNLADAFLGG QLRSIRKRRG KRKRKYCSPK EGSVGESEFL GASDFASVSW  240
CKETSASNSA QIARSSGVED QSRDSSKDRI DEIMGIFSSV AQTDCASVFR RRLDSQKRGR  300
YKKMILRHMD FDTIKSRIGS NSINSVRELF RDMLLVANNA LVFYSKNTRE YKSALLLRHI  360
VTTSLRQHFK EYRTKVPIAT FAPTRPIHKP PAKPRSIRPG NHKPPGNAAN NRNPVVGNSN  420
VSKKPTNASS PPLMESLVVR KKGSARPRKG GCGQASKKSE SAAKGRKRTR AR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464470GRKRTRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711270.10.0PREDICTED: uncharacterized protein LOC107925179
TrEMBLA0A2P5XNG10.0A0A2P5XNG1_GOSBA; Uncharacterized protein
STRINGGorai.011G024300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.12e-20DNA-binding bromodomain-containing protein