PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0166

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 351aa MW: 38624.2 Da PI: 5.7981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0166	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.9e-06	243	280	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gh_A10G0166 243 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 280 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.087	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-9	241	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.90E-6	241	284	No hit	No description
SuperFamily	SSF47459	8.11E-12	241	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MAEEFQAAIC GGGGGTWWNI PTKTMFSGCN SPLYSTTIAD MGSFGWGNDM VATDDIIIKP 60 RSCYNSDNSG TNNNSSILID STLGFGLSSS DNWNQSLLRI NNQEFPMDST YECPSTLLFD 120 TDPQQQSVFN NNQSINYMSC SSLSSSPSWP KLAPPLTTKQ QQQPPVGTGT LQFSNNTSFW 180 NTSATGNILP SLYEEKPNCP TLTTKTNIEE VRKNSNSKKA SNETPLKRPR LETPSPLPTF 240 KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVNVLSTP YMKQAAASIQ 300 QSTDKLKDHL EGPKQDLRSR GLCLVPVSST FPVANETPAD FWTPTFGGTF R

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MAEEFQAAIC GGGGGTWWNI PTKTMFSGCN SPLYSTTIAD MGSFGWGNDM VATDDIIIKP  60
RSCYNSDNSG TNNNSSILID STLGFGLSSS DNWNQSLLRI NNQEFPMDST YECPSTLLFD  120
TDPQQQSVFN NNQSINYMSC SSLSSSPSWP KLAPPLTTKQ QQQPPVGTGT LQFSNNTSFW  180
NTSATGNILP SLYEEKPNCP TLTTKTNIEE VRKNSNSKKA SNETPLKRPR LETPSPLPTF  240
KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVNVLSTP YMKQAAASIQ  300
QSTDKLKDHL EGPKQDLRSR GLCLVPVSST FPVANETPAD FWTPTFGGTF R

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6776	0.0	leaf\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394769	1e-125	GQ394769.1 Gossypium hirsutum cultivar Deltapine 90 clone MONCS1792 SSR marker DC40367 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016711012.1	0.0	PREDICTED: transcription factor bHLH112-like
Swissprot	Q94JL3	3e-72	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A1U8L8T6	0.0	A0A1U8L8T6_GOSHI; transcription factor bHLH112-like
STRING	Gorai.011G020100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8062	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	2e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]