PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0164

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 222aa MW: 25580.5 Da PI: 6.681

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0164	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	22	85	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C................TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.............kapskKlsKaeiLekAveYIksLq 55 ++ErrRR+++ +++ +Lr+l+P + + ++Ka+i A+ YI++Lq Gh_A10G0164 22 LQAERRRRQKLSDRLLTLRSLVPIiTNaitqhtflyiryyLNINHIMNKATIIDDAITYIQELQ 85 579*******************666*********99*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-14	13	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.13E-8	14	89	No hit	No description
PROSITE profile	PS50888	13.605	16	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-13	16	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-9	21	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.4E-8	22	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGRRKLEDDD DNNNKEFKSK NLQAERRRRQ KLSDRLLTLR SLVPIITNAI TQHTFLYIRY 60 YLNINHIMNK ATIIDDAITY IQELQKTSQV LSEQLLEMEG SSEESVMPMK LEIDVAQHDM 120 KKCGIKEEVK VSNIDGNKFL IKIIVEKKRG CFTQLVEAMN YLGFELSETN VTTFSGAMLF 180 SSCVHGKYGD TLMVEHIEEL LSEMMKSMKK NSQSTIELGN TN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605994.1	1e-142	PREDICTED: transcription factor DYT1
TrEMBL	A0A0D2VH36	1e-135	A0A0D2VH36_GOSRA; Uncharacterized protein
STRING	Gorai.011G019900.1	1e-136	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8358	25	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	2e-40	bHLH family protein