PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G0054

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 387aa MW: 42477 Da PI: 5.7936

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G0054	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	221	279	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Gh_A10G0054 221 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 279 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-31	214	281	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	215	281	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-26	218	281	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	220	280	IPR003657	WRKY domain
Pfam	PF03106	7.6E-26	222	279	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MSIFFGLQME NYQGDLNDIV RASAEPAHFS DTVPQLSSWQ QQFPSSDPLS FSSSAMEDDH 60 STNTFGDPFS AIRDPLLLLQ ELNVVGTGSS STYFNNSPNS TNDHHHMGGF DDMTNPCNIF 120 SRIQISHSSN PLPPCDPPGM AAASTGLGGH KAPAVFPSDM INAKSCLIDN TTAAASVPVQ 180 ISSPRNLGIK RRLGKSQGKK VVCIPAPAAA NSRSSGEVVP SDLWAWRKYG QKPIKGSPYP 240 RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSQPSKPNA 300 NNTGSKMGSP SDSEPQKTTK ETIKEETEMD DMAKQQLDID QATTVETQQQ QHDQDFFADL 360 DEILFDQQKE NKPMDPFTLF DYNNASF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MSIFFGLQME NYQGDLNDIV RASAEPAHFS DTVPQLSSWQ QQFPSSDPLS FSSSAMEDDH  60
STNTFGDPFS AIRDPLLLLQ ELNVVGTGSS STYFNNSPNS TNDHHHMGGF DDMTNPCNIF  120
SRIQISHSSN PLPPCDPPGM AAASTGLGGH KAPAVFPSDM INAKSCLIDN TTAAASVPVQ  180
ISSPRNLGIK RRLGKSQGKK VVCIPAPAAA NSRSSGEVVP SDLWAWRKYG QKPIKGSPYP  240
RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSQPSKPNA  300
NNTGSKMGSP SDSEPQKTTK ETIKEETEMD DMAKQQLDID QATTVETQQQ QHDQDFFADL  360
DEILFDQQKE NKPMDPFTLF DYNNASF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	195	282	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	195	282	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438458	1e-112	KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648619.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X1
Swissprot	Q9SA80	3e-93	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A0D2VGJ0	0.0	A0A0D2VGJ0_GOSRA; Uncharacterized protein
STRING	Gorai.011G006600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	2e-87	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]