PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2423
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 492aa    MW: 55409.6 Da    PI: 4.4678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2423genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-1682140155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr++  +g+WvAeIr p +++    k   r +lg+f  a +Aa a+++a+ +++g
  Gh_A09G2423  82 CKYRGVRQRI-WGKWVAEIRQPINRNrlasKGnNRLWLGTFSNAIDAALAYDEAATAMYG 140
                  79*****998.**********988555997447**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-2782150No hitNo description
PfamPF008477.7E-1182140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2783149IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1783149IPR016177DNA-binding domain
SMARTSM003802.0E-3183154IPR001471AP2/ERF domain
PROSITE profilePS5103220.91683148IPR001471AP2/ERF domain
PRINTSPR003672.3E-108495IPR001471AP2/ERF domain
PRINTSPR003672.3E-10130150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MKIKRSSCDT EDGFIASNKK PRTRMSGRES VEDTIEKWKK YNNNNQLGLG EEDGLKKVSK  60
LPAKGSKKGC MQGKGGPENS RCKYRGVRQR IWGKWVAEIR QPINRNRLAS KGNNRLWLGT  120
FSNAIDAALA YDEAATAMYG SYARLNFPDH HSKEPVDNST TEIGSIESTS TSTLDDKRAN  180
YETPAVEPVE ESKVLLEINS TGKHDYSQVC TEEEAEDTAT DARASESTGC KELRIHNSNG  240
INELKDEECQ LRNSCMDSDY YNTQTTLERR GTESESDFNF RYNYLDNEDQ DAGIAIFELD  300
PFKDVKVETP VTRENWEGEL AGSIESGKGY SEDDNLKTEL TDSDIYRKPI SEMKAEGSIS  360
RDEVDVEPGG FNDFYNYNCF DDVYDLKRYV PPDSSCQQQL NTPTSVGGGF NWSANKLESV  420
HSWSGEAIAD VKPFALIRND KYGLGGGLQE SGNQDETGFD LDHTMEYLRP DVDLDFLEAI  480
KHTDLWSPER EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1784148360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.158880.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098694540.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606681.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A2P5Q9X70.0A0A2P5Q9X7_GOSBA; Uncharacterized protein
STRINGEOY070751e-162(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2867523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-34ERF family protein