PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G2341
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 659aa    MW: 71540.6 Da    PI: 5.4617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G2341genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12483528454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Gh_A09G2341 483 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAISYINEL 528
                  799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-5882263IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.25479528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.32E-15482533No hitNo description
SuperFamilySSF474599.81E-19482553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10483528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-19483549IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-17485534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MKDHRLAPTM NLWTDDNAPV MEAFMSSDLS SLWPPPLSSA STSTPAASAA GGGGGGGGGH  60
DLSISFLAQS QPSVSLLNQE TLQQRLQALI EGGRDCWTYA IFWQSSYDYS GATVLGWGDG  120
YYKGEEDKGK GKSKAYSSSV AEQEHRKKVL RELNSLISGS TATADDAVDE EVTDTEWFFL  180
VSMTQSFVTG SGLPGQALYN SSPVWVAGSD RLASSMCERA RQGQLFGLQT IVCIPSANGV  240
VELGSTELIT QSSDLMNKVR ILFNFNNGIE AGSWSVSNNT ADQGENDPSS LWISEPNNGV  300
EPKDNNNNGN HNPSIQDPST SSLTENPSSI HGGNQQQQPQ GQSFRLNFSN YGFDGNSSVK  360
NGKFSAHLLK PESGEILNFG ESKKSGNGNL FSANSQLVVE ENKKKRSPTS RGSNEDGMIS  420
FTSGAVLPCS GVAKPGGCAR DSDNSDIEAS IVKEADSSRV VEPEKRPRKR GRKPANGREE  480
PLNHVEAERQ RREKLNQKFY ALRAVVPNVS KMDKASLLGD AISYINELRT KVQDADSEKE  540
ELLKQLDEMK KQLASKESCS MAPPPPDQDR NMSNKLIELD IDVKIIGLDA MIRIQCSKKN  600
HPAARLMTAL KELDLDVHHA SVSVVNDLMI QQASMKMGSR FYTQEQLRIA LASKVGDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-75772664195Transcription factor MYC3
4rqw_B3e-75772664195Transcription factor MYC3
4rs9_A3e-75772664195Transcription factor MYC3
4yz6_A3e-75772664195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464472KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.166220.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots, stems, leaves, flowers and fruits. {ECO:0000269|PubMed:15231736}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in the promoter of the jasmonate-induced gene LAPA1 (PubMed:15231736). Acts as negative regulator of blue light-mediated photomorphogenesis and positively regulates root growth (PubMed:24483714). Promotes growth in response to the phytohormones abscisic acid (ABA) and jasmonate (JA) (PubMed:24483714). Binds to the G-box motif (5'-CACGTG-3') of the RBCS-3A gene promoter (PubMed:24483714). Acts downstream of the jasmonate (JA) receptor to orchestrate JA-mediated activation of plant responses (PubMed:28733419). Positively regulates both wound-responsive and pathogen-responsive genes through MYC2-targeted transcription factors (MTFs) involved in early response to JA (PubMed:28733419). With JA2L forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). With ERF.C3 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). Plays a critical role in orchestrating JA-mediated defense gene expression during Botrytis cinerea infection (PubMed:28733419). Regulates negatively defense responses to root-knot nematodes, potentially by mediating crosstalk among the hormones strigolactones, abscisic acid (ABA) and jasmonate (JA) (PubMed:30576511). Regulates the termination of JA-mediated defense responses by specifically binding the G-box (5'-CACATG-3') motifs in the promoters of MTB1, MTB2 and MTB3, which are transcription factors that negatively regulates JA signaling (PubMed:30610166). May be involved in JA-induced chilling tolerance, possibly by ameliorating the antioxidant enzyme system of fruit and increasing proline and lycopene levels (PubMed:29528226). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24483714, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:29528226, ECO:0000269|PubMed:30576511, ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate (PubMed:15231736, PubMed:28733419). Induced by wounding (PubMed:15231736). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced in fruit by storage in cold (PubMed:29528226). Induced by hydrogen peroxide and infection with root-knot nematodes (PubMed:30576511). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:29528226, ECO:0000269|PubMed:30576511}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608416.10.0PREDICTED: transcription factor MYC4-like
SwissprotA0A3Q7HRZ60.0MYC2_SOLLC; Transcription factor MYC2
TrEMBLA0A0D2QEJ80.0A0A0D2QEJ8_GOSRA; Uncharacterized protein
TrEMBLA0A288F5E30.0A0A288F5E3_GOSHI; MYC transcription factor 1
STRINGGorai.006G216700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Gupta N,Prasad VB,Chattopadhyay S
    LeMYC2 acts as a negative regulator of blue light mediated photomorphogenic growth, and promotes the growth of adult tomato plants.
    BMC Plant Biol., 2014. 14: p. 38
    [PMID:24483714]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  5. Min D, et al.
    SlMYC2 Involved in Methyl Jasmonate-Induced Tomato Fruit Chilling Tolerance.
    J. Agric. Food Chem., 2018. 66(12): p. 3110-3117
    [PMID:29528226]
  6. Xu X, et al.
    Strigolactones positively regulate defense against root-knot nematodes in tomato.
    J. Exp. Bot., 2019. 70(4): p. 1325-1337
    [PMID:30576511]
  7. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]