PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G1952

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 227aa MW: 26300.1 Da PI: 10.3393

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G1952	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.5	2.1e-07	77	121	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ + +++ L ++lP +K++K +i++ A++ +++L Gh_A09G1952 77 HMMNERIRREKQKRSYSALHSMLPLG-----TKNDKNSIVQTATRRVREL 121 889*********************97.....7999999999999888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-10	69	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.22E-7	70	122	No hit	No description
PROSITE profile	PS50888	11.814	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-5	77	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-7	77	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MNELIKQLLQ GEIFWYETKP TRTAFVPYCN TPRQVEPGRN DGGNSENMNK KMIGFLKKSW 60 PATVETKDGE KERCFRHMMN ERIRREKQKR SYSALHSMLP LGTKNDKNSI VQTATRRVRE 120 LEWLRKDLER RNYELKSNHN NKIGLKVENP TSGIDSMLET LKCLKELDSN PTIIQSNFTP 180 QQFLAVLVFP TQGEAAKVEN ALDRTLQETG RKLQGPRNGP TPFLIHK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016715249.1	1e-170	PREDICTED: transcription factor bHLH92-like
TrEMBL	A0A1U8LPY8	1e-168	A0A1U8LPY8_GOSHI; transcription factor bHLH92-like
STRING	Gorai.006G246400.1	1e-156	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	3e-43	bHLH family protein