PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1832
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 315aa    MW: 34990.3 Da    PI: 6.9483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1832genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19166215356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae Aa a++ a+  l+ge
  Gh_A09G1832 166 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEAAAMAYDTAAYILRGE 215
                  8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-21164224No hitNo description
SMARTSM003801.1E-35165228IPR001471AP2/ERF domain
PROSITE profilePS5103222.563165222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31165223IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22165223IPR016177DNA-binding domain
PRINTSPR003671.3E-10166177IPR001471AP2/ERF domain
PfamPF008472.3E-12166215IPR001471AP2/ERF domain
PRINTSPR003671.3E-10188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSLEDKFPKM ETFMNKDWPS FCYGMATTGS TFFNNPIIWG SSSSEETPGS NLLKNVPGFI  60
NQDINHGFNP INQAQPSPSM ATTMSQFPDL TSLFGPSKPV IDPINENPPL QTPQQWLRIN  120
QSFTNDQSKG FSDYWLSTTK THPMKYSGRR FQNQHQKGYS SPGKLFRGVR QRHWGKWVAE  180
IRLPRNRTRV WLGTFDTAEA AAMAYDTAAY ILRGECAQLN FPDLKDQVMA NSLNGNTAAI  240
LGAKLQALSQ GSTVNKKSDL DTTTTMPAED GVSGLNRNTT KNMEALSSDA DGVQLSRLPS  300
MDIDIIWDAL LVSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19161222163ATERF1
3gcc_A1e-19161222163ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147881e-128JX614788.1 Gossypium hirsutum clone NBRI_GE58430 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610162.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2P5WQV10.0A0A2P5WQV1_GOSBA; Uncharacterized protein
STRINGGorai.006G222600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-56ERF family protein