PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1449
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 628aa    MW: 70355.5 Da    PI: 10.5697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1449genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07534583147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Gh_A09G1449 534 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 583
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.74E-5349420IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.453529588IPR017930Myb domain
SuperFamilySSF466897.52E-15531617IPR009057Homeodomain-like
SMARTSM007171.2E-7533586IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10534584IPR009057Homeodomain-like
CDDcd116601.43E-16535585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MVSQTRLEYG FIGYQVPVFP RASRSARVRV PIRKKSGNNE KHAFEILVSV AGDFLQEGET  60
FVPPNCKKDQ QNACKNRVLK EQEDEIQSSK CNLSDKETYN EKTLSGYHQI RTVNKFSHAP  120
DQFNLKPYSS LKGFDKLANV SGRNANHSSE LGISSLISGE FSVGQFEDAR AELSIIQTVK  180
SETLQPTGSL DALEMDCKPP HYFCSGSKTS LFKDWTTLGP SRRSDTIETV SRDDNGNYMA  240
DQRIKNLSSS RRWRVSPNLN GGASFRNDGK RRKIFHDGRT SYSRQRSKRI SPLKRRDFFN  300
QCRFSGSDRG FQLDDRFNSA ADKRVDDDNY CAAIRVASSV ASPHPHPGSR DRNVKLRIKS  360
FKVPELLVEI PTTATVGSLK RSVMEAVTTV LGDGLHVGIL LQGKKVRDDS KTLIQTGISR  420
DGKHRNLGFM LEPRHAQIKL PRCLGEQGIT SHATSFTLDP RTSSISLDPP VAGCINGAQR  480
DHHLVPSLPN ISASTTLPNS QSRVSVPAIS GEALAVVPIH HRAGRREFVQ RRIRRPFSVS  540
EVEALVQAVE KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP  600
QELLDRVLAV HAYRSQQQAK QQQLKSGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-535186211104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288RQRSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669642.10.0PREDICTED: telomere repeat-binding protein 2-like isoform X1
RefseqXP_016669643.10.0PREDICTED: telomere repeat-binding protein 2-like isoform X1
RefseqXP_016669644.10.0PREDICTED: telomere repeat-binding protein 2-like isoform X1
TrEMBLA0A1U8I1U80.0A0A1U8I1U8_GOSHI; telomere repeat-binding protein 2-like isoform X1
STRINGGorai.006G172000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2218045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-105TRF-like 2