PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G1260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 278aa MW: 30999 Da PI: 4.8532 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.3 | 6.2e-37 | 14 | 68 | 7 | 61 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP+Ggg+rkn++ Gh_A09G1260 14 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKNRRG 68 8***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.574 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-31 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEREWKPSGE ISPNCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPIGG 60 GCRKNRRGKS LLRLPTDGAP CNKSLSSDSC DNKVNALSDS NTSSSMSDGS HIDLALLFAN 120 FLNNQQPENK SSFEVPELLT EFDPSREFPS LSNTNMESSL QLPKENGVTG CLTHSDFSTD 180 YHLSNNDQIY HSGLDYLDRV QQCTGDETSN YALPPLPDDD LSSQEILWPN SHSSITHALH 240 LQATQEPLLG PETQDPNLLF GNWSPFDLSS DDTFSTRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610559.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
TrEMBL | A0A2P5YA36 | 0.0 | A0A2P5YA36_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G148800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9141 | 22 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-38 | Dof family protein |