PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A09G1194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 685aa MW: 75440.4 Da PI: 9.4517 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.7e-11 | 10 | 44 | 1 | 36 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 ++ W t+E++ll++av+++G+++W+++a +++ +Rt Gh_A09G1194 10 KQTWGTWEELLLACAVHRHGSNSWDSVAMELQ-KRT 44 789*****************************.999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.6E-7 | 9 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.04E-5 | 9 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-10 | 10 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 10 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-6 | 12 | 65 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 1.7E-13 | 290 | 418 | IPR001487 | Bromodomain |
SMART | SM00297 | 1.2E-14 | 299 | 408 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.31E-15 | 301 | 405 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.17E-13 | 310 | 403 | No hit | No description |
Pfam | PF00439 | 2.7E-10 | 314 | 392 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 13.851 | 318 | 389 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 685 aa Download sequence Send to blast |
MAKPHNFPEK QTWGTWEELL LACAVHRHGS NSWDSVAMEL QKRTSTFQHL FFTPLSCQQK 60 FQDLKRRFAE NGDDDETTNN ISTSAVPWLD ELRKLRVAEL RREVQQYDLS IVSLQLKVQK 120 LKEEREQSLT ENGKETEKSD LEREKGSEKK EENETENITR RPVNSREESE RENRSVNESN 180 STDPKEEDPG TGPDEAKDEL EPVEPDGGET GKEVQSVKPE GEASCNGSCD SVAKGSAENS 240 KRVDPRETGD SPESVAESKG EEPNRESSDV QSSASLSGKE KKNAEPGEPD NGELDQSPSI 300 KKVSVESQPL VEFLEIFQSH KLGSLFERRL ESQKTPDYSN LIRQHLDLET IGMRVEEGWY 360 SGCKSKFFRD LLLLLTNAII FFGKESSEYA AAIEFRQLVS KEIGAQFRNS SVLPKEQSPS 420 RVPESQMPLK PEPQLSLSLS MKPKLSVPLI ACRKRSSIAA KSSTSSSGQE KKRQLLASLM 480 NEKPALGWKQ HDKSTEESPV AKKRTRESPA SGSRKASKNA KARSNTNTNK NSGTNANAAI 540 SSKGGSSNDN SESKGGEEEK NNSKTASSKK PSAANFLNRM RSSLSGNEPL TETLKGVITS 600 DKGKGGGDAG EHKKNSASSK GDQQKDRTPT TRTRSGGKRT SPAKRSTGRP PKRVPATQSA 660 PPGKRGREAV ENHSGGGQAK KRSRK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.10363 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX580254 | 2e-92 | JX580254.1 Gossypium hirsutum clone NBRI_GE12650 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017611313.1 | 0.0 | PREDICTED: muscle M-line assembly protein unc-89-like | ||||
TrEMBL | A0A2P5X120 | 0.0 | A0A2P5X120_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G142400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6530 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57980.1 | 1e-103 | DNA-binding bromodomain-containing protein |