PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G1160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 642aa MW: 69268.7 Da PI: 7.1254 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 2.1e-07 | 223 | 243 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Gh_A09G1160 223 PCPDFRK-GACRRGDMCEYAHG 243 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.4E-18 | 3 | 98 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.13E-18 | 3 | 110 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.06E-16 | 3 | 94 | No hit | No description |
PROSITE profile | PS50297 | 19.651 | 4 | 97 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.0E-10 | 4 | 73 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 5.3E-4 | 4 | 34 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 4.3E-5 | 5 | 20 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.075 | 39 | 74 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 5.3E-4 | 39 | 71 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 4.3E-5 | 58 | 72 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 218 | 244 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 223 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-5 | 223 | 243 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 223 | 245 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 251 | 281 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 65 | 253 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MVNNERTPLM VAATYGSIDV IKLILSSSDA DINRVCGHDK STALHCAASG GASNAVDVVK 60 LLLAAGADAN LVDANGHLPI DVIVVPPKLQ LVKLTLEQLL ATESSVLEQN LRVSTAVTNS 120 GSNPPSPSRE NGSPTSGLGS PQKLKSTNAP FSSTSEKKEY PIDPSLPDIK NSIYSTDEFR 180 MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPDFRKG ACRRGDMCEY 240 AHGVFECWLH PAQYRTRLCK DGTSCARRVC FFAHTAEELR PLYVSTGSAV LSPRSSTSGA 300 TAMDFAAALS LLPGSPSSVS VMSPSPFTPP MSPSANGMSH SNVAWPQPNV PALHLPGSNL 360 QSSRLRSSLN ARDIPTEDFN LLPDFDVQQQ QLINELSSLS QPSMSSNSLN RSGRLKTLTP 420 SNLDDLFSAE NSSLQYSDQA LAAAVYSPTH KSAVLNQFQQ QQSMLSPINT NFSPKNIEHP 480 LLQASLSGRM SPRNVEPISP MSSRVSMLVQ REKQQQFRSL SSRELGSGSS ATVGSPVNSW 540 WGSSNGKPDW AVDADGSGKL RRSSSFELGN GDEPDLSWVQ SLVKESPTEV KEKTGVPVSG 600 VTVNASTGLG SSMNSRIDPV DTAVLGAWIE QMKLDELVAQ QN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2249 | 0.0 | boll| ovule| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016669499.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1U8I1F5 | 0.0 | A0A1U8I1F5_GOSHI; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | Gorai.006G138100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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