PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0958

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 159aa MW: 17772.2 Da PI: 7.9943

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0958	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	96.2	7.6e-30	2	113	2	123
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +++ +se+vCyv+CnfCntilavsvP++slfk vtvrCGhC++llsvn+ +++q+++ ++ +++ ++ e +++e+ s+s+ ++ Gh_A09G0958 2 SLDLASERVCYVHCNFCNTILAVSVPYNSLFKFVTVRCGHCANLLSVNMGTSQQTVPIQDA-QKQQIINIDE-----------DPSNKECGSSSKCNK 87 567799**************************************************99996.3322222222...........222222222222222 PP YABBY 100 kl..senedeevprvppvirPPekrq 123 ++ ++ ++e+pr+pp+ P k q Gh_A09G0958 88 QFsgFDSAQNEAPRMPPIRLPYAKAQ 113 22112456677777777766766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.6E-30	6	95	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSLDLASERV CYVHCNFCNT ILAVSVPYNS LFKFVTVRCG HCANLLSVNM GTSQQTVPIQ 60 DAQKQQIINI DEDPSNKECG SSSKCNKQFS GFDSAQNEAP RMPPIRLPYA KAQCIVDTIR 120 LNWAHFPHIH FGLKLEGNKQ AKLDQSFADQ GAQKSNPYY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23498	6e-96	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578808	7e-61	JX578808.1 Gossypium hirsutum clone NBRI_GE10906 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016669077.1	1e-101	PREDICTED: putative axial regulator YABBY 2
Refseq	XP_017608603.1	1e-101	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	4e-47	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0B0PA21	1e-100	A0A0B0PA21_GOSAR; Putative axial regulator YABBY 2-like protein
STRING	Gorai.006G117800.1	3e-96	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-49	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]