PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0940
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 672aa    MW: 73980.6 Da    PI: 7.5845
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0940genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-093694061954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt  qV++WF N R +
  Gh_A09G0940 369 FEHflHPYPKDSDKHMLAKQTGLTRGQVSNWFINARVR 406
                  554459******************************88 PP
2BELL93.42.1e-302503041872
         BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +V++rY+qy++q+++v+ssFe+vaglg+ak+Yt+lAlk+iS++FrcLkdai++q+
  Gh_A09G0940 250 KVEQRYRQYHHQMHIVVSSFEQVAGLGAAKSYTALALKTISKQFRCLKDAISGQM 304
                  69**************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-35207302IPR006563POX domain
PfamPF075263.6E-5212241IPR006563POX domain
PfamPF075263.9E-25250301IPR006563POX domain
PROSITE profilePS5007111.872347410IPR001356Homeobox domain
SMARTSM003891.3E-8350414IPR001356Homeobox domain
CDDcd000861.73E-11350411No hitNo description
SuperFamilySSF466891.84E-16351416IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28353416IPR009057Homeodomain-like
PfamPF059201.3E-17367406IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MATYFHGSSD FQAASADGMQ TLYLMNPNYV PYADTHQQPS AATNMFFLSP TSLPQAPPPN  60
HHQRFLGLPL PTPSTAIKPL NSDDPHRPSP LQGVVPGFHS NLWGSSVDHQ NSPGSSHPQV  120
VSAVATGDNS GGSHDVASQS GFQRPVVSPR QGLSLSLSSQ QVGYRSSNNV ETDIQGQPQV  180
PTMSLGEDVR ISGNSPSSVS VVSNGISGAQ SVVLGSKYLR AAQELLDEVV NVGKGIKTDV  240
SEGTKEEKIK VEQRYRQYHH QMHIVVSSFE QVAGLGAAKS YTALALKTIS KQFRCLKDAI  300
SGQMKATSKS LGEEDCLGAK VEGSRLRYVD HQLRQQRTLQ QLGMIQHNAW RPQRGLPERA  360
VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRGQVSNWF INARVRLWKP MVEEMYLEEV  420
KEQERNGSEV KANKSVQKES ESSSSAHQEN VSFMMNQVKA QSQPEKSINQ QQNMPPTEFS  480
NSTMGGSFLP QTATAFNLIG SCDLDGAAQR SPKKPRSSVN ELQNSPSSIL SMDMEMKQGE  540
TREINMNFGD ERLPKDSYWF FTGTDNTGSG FPTYSAMGDI GRFDPNQLTQ RFHGNSVSLT  600
LGLPHCENLS LSGNHQSLLS NQNIQLGRRL ELGQSEVDFC GINNTQQASH SSTFEMQNRK  660
RFAAQLLPDF VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16356414563Homeobox protein Meis2
3k2a_B2e-16356414563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.126140.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6152608e-98JX615260.1 Gossypium hirsutum clone NBRI_GE59161 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485171.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_012485172.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A0D2Q7Y90.0A0A0D2Q7Y9_GOSRA; Uncharacterized protein
STRINGGorai.006G115600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-106BEL1-like homeodomain 1