PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0692
Common NameHSF15
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 189aa    MW: 22027 Da    PI: 7.5669
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0692genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.7e-34241242103
                   HHHHHHHHHC........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
  HSF_DNA-bind   2 Flkklyeile........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                   Fl k+y +le        ++e+k+++sw+++gn f+v+ +++f++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++Fk+g 
   Gh_A09G0692  24 FLLKTYALLEeaeeggggEKEYKKIVSWNDEGNGFIVWSPTDFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFKHEKFKRGY 111
                   99********7777777667****************************************************9998.........************ PP

                   XXXXXXXXXXXXX CS
  HSF_DNA-bind  91 kellekikrkkse 103
                   +++l +i rkkse
   Gh_A09G0692 112 EHMLVEITRKKSE 124
                   **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3516116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-4220121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-2721121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.5E-2924121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-97082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-98395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MELEDPNYQN NKSKSLVTKG TAPFLLKTYA LLEEAEEGGG GEKEYKKIVS WNDEGNGFIV  60
WSPTDFSDLT LPRYFKHNNF SSFIRQLNTY GFKKTSSKRW EFKHEKFKRG YEHMLVEITR  120
KKSEATTAFL KSNCGDEDNM MMKNGNQQTL MEENENLRKE KMELETQIAQ FKALEIKLLD  180
CIAQHMGPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B8e-16211211104Putative transcription factor
5d5x_B8e-16211211104Putative transcription factor
5d5x_E8e-16211211104Putative transcription factor
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486180.0KJ748618.1 Gossypium hirsutum HSF15 (HSF15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670225.11e-139PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A1U8HW301e-138A0A1U8HW30_GOSHI; heat stress transcription factor B-2a-like
STRINGGorai.006G087100.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-35heat shock transcription factor B2A