PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G0477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 30438.2 Da PI: 8.4757 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 2.9e-08 | 154 | 201 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + ++ + a +L + ++Y++sLq Gh_A09G0477 154 SHSLAERVRRGKINERLRCLQDIVPGC----HRTMGMAVMLDEIINYVQSLQ 201 8*************************9....889999*************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.44E-8 | 148 | 205 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-16 | 148 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.996 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 150 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-5 | 154 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-8 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MADFTSDFQN FKQSFSFLDM ESLNHFTELN PRLLDNSVMN YQSFLPSSID NFFSQAHAIP 60 GHEGGNLQSS ASVFQPLLTA KTELIHESKK RKALDVSKSS SFGNSLSSPQ VSETEVKRRN 120 DSGRGKRAKR NEKEEEKPKD VVHVRARRGQ ATDSHSLAER VRRGKINERL RCLQDIVPGC 180 HRTMGMAVML DEIINYVQSL QNQIEFLSMK LTAASTYYDF NSEPDALERM QREKAQEAKE 240 LERLMKERYV GGLACFHSSS SSTWSSLT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 129 | KRRNDSGRGKRAKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23115 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016668456.1 | 0.0 | PREDICTED: transcription factor BEE 1-like | ||||
Swissprot | Q8GWK7 | 3e-64 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A1U8HR46 | 0.0 | A0A1U8HR46_GOSHI; transcription factor BEE 1-like | ||||
STRING | Gorai.006G060400.1 | 1e-177 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2997 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 3e-61 | BR enhanced expression 1 |
Publications ? help Back to Top | |||
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