PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0364
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 653aa    MW: 72226.7 Da    PI: 5.2649
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0364genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.42.5e-1342876521374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                  lv+lLl+cAeav+++d   a++++ +l+  ++p gd+mqR+a++fteAL+arla    ++++++++ +p +  ++ns e+l+++++ ++++P++kf+h
  Gh_A09G0364 287 LVHLLLACAEAVAKEDYLSARKYIHHLNRVVTPLGDSMQRVASCFTEALSARLAAtmtTSPSTSSSPKPYSPFPSNSLEVLKIYQIVYQACPYIKFAH 384
                  68***************************************************99522234555555555666678********************** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  +taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef++ + ++led+++++
  Gh_A09G0364 385 FTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----SIEAIKETGRCLTELAHSLHIPFEFHP-IGEKLEDIKPHM 477
                  ******************************************************....9**************************.7*********** PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++ + gEalaVn v  lhr++    +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ +++
  Gh_A09G0364 478 FNRRVGEALAVNAVNTLHRVP--GNCLG----NLLAMIRNQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFA 569
                  ********************9..44444....5***************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ei+n+vaceg+er+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Gh_A09G0364 570 PEIRNIVACEGSERIERHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 652
                  **********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.347261632IPR005202Transcription factor GRAS
PfamPF035148.8E-132287652IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MSMINSLCGS MGSIKSENSC ESLVEPKKIA PPSCDMEQNS LTPPSLNFPA VKFELDGDVE  60
LQSPDSSIWE TFFSDHFDAD FMVSSPVRNL PSPQISSYNF NNVMSMQGQS ILGCSPPRFS  120
PQLGSYSSSS GNKGKGQSPL HRVFNSPNDQ FMQVESLSLP AIEEFLDDGY EDQYQTTKIS  180
GIGTTNNMFE MPTTGPSMLD CISMPNSSTF CGSASETTSS QLDQEQHYQL NSVSRAPLSQ  240
QLQQEKQQEK QISAAAAEQQ QHQNLGHTLM VPIPIGPEQE QDSGLQLVHL LLACAEAVAK  300
EDYLSARKYI HHLNRVVTPL GDSMQRVASC FTEALSARLA ATMTTSPSTS SSPKPYSPFP  360
SNSLEVLKIY QIVYQACPYI KFAHFTANQA IFEAFETEER VHVIDLDILQ GYQWPAFMQA  420
LAARPSGAPF LRITGVGPSI EAIKETGRCL TELAHSLHIP FEFHPIGEKL EDIKPHMFNR  480
RVGEALAVNA VNTLHRVPGN CLGNLLAMIR NQAPNIVTLV EQEASHNGPY FLGRFLEALH  540
YYSAIFDSLD ATFPPDSAQR AKVEQYIFAP EIRNIVACEG SERIERHERL EKWRKLMEGK  600
GFKGVPLSAN AVTQSKILLG LYSCDGYRLT EDKGCLLLGW QDRAILAASA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1002756517378Protein SCARECROW
5b3h_A1e-1002756516377Protein SCARECROW
5b3h_D1e-1002756516377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.210070.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5784731e-138JX578473.1 Gossypium hirsutum clone NBRI_GE10507 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668567.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1U8HRA00.0A0A1U8HRA0_GOSHI; DELLA protein RGL1-like
STRINGGorai.006G044300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-100RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]