PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 30595.4 Da PI: 4.7581 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144 | 8.5e-45 | 28 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 p+G+rF+P+d+elv +yLk+k+ + +l+ + i++v++y+++P++L +k+++ +e+ewyfF++rdkky++g r+nra+ +gyWkatg dk ++s +++ Gh_A09G0040 28 PAGYRFKPRDDELVLFYLKPKLLNLRLPP-NRIRDVELYQYNPQQLIEKYESyGEEEWYFFTPRDKKYRNGLRPNRAAGDGYWKATGADKILKS-ESH 123 89************************999.77**************8555554788********************************988877.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g +k Lvfykg+ pkgektdW+mhe+rl Gh_A09G0040 124 EIGYRKALVFYKGKPPKGEKTDWMMHEFRL 153 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-54 | 25 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.149 | 27 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-24 | 28 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSNNFGLGTM ENINNYEEDD EELLNSFPAG YRFKPRDDEL VLFYLKPKLL NLRLPPNRIR 60 DVELYQYNPQ QLIEKYESYG EEEWYFFTPR DKKYRNGLRP NRAAGDGYWK ATGADKILKS 120 ESHEIGYRKA LVFYKGKPPK GEKTDWMMHE FRLKDPPAKL SQDEMRLDDW ILCKIYKKSD 180 KSSKNSALIS DNSHGVVSFE YGSDEFGEMD DNLYCEYLMF DHNPSLLLDD NFCDYYDPSL 240 MPMAMVEQGR MDSPDKKTTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 17 | 184 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 17 | 184 | 7 | 171 | NAC domain-containing protein 19 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847251 | 0.0 | KC847251.1 Gossypium hirsutum NAC domain protein NAC74 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610605.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | K4BNG7 | 4e-57 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
Swissprot | K4BWV2 | 4e-57 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A2P5X5K9 | 0.0 | A0A2P5X5K9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G005100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24908 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-56 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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