PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G2566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 463aa MW: 51537.8 Da PI: 5.4547 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.2e-11 | 147 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg + + a+++a+ k++g Gh_A08G2566 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGMYTC-DWLTLAYDRAAIKFRG 195 78*******************......55********99.9999999999999886 PP | |||||||
2 | AP2 | 38.6 | 2.6e-12 | 238 | 288 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + +Aa+a+++a+ k +g Gh_A08G2566 238 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVDAARAYDKAAIKCNG 288 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.2E-9 | 147 | 205 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 11.904 | 148 | 203 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.69E-15 | 148 | 205 | No hit | No description |
SMART | SM00380 | 1.4E-18 | 148 | 209 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-9 | 148 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-16 | 238 | 297 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.33E-24 | 238 | 298 | No hit | No description |
Pfam | PF00847 | 3.8E-7 | 238 | 288 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.106 | 239 | 296 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-31 | 239 | 302 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 239 | 296 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 240 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 278 | 298 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MLDLNLNVGS TESAQDSNSA APFSTERNGD CGNQMDESGT SNSSIVNDDD ESCSTRANGD 60 AFTLCFDILK VGSGGNDFQN DDADVVVTRE LFPATRVGIS EGQSSGNNNK WIDHSFERKE 120 ADESLVIRQQ PSQTAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGMYTCD 180 WLTLAYDRAA IKFRGVDADI NFSVSDYEED MKQMKNLCKE EFVHILRRQS TGFSRGSSKY 240 RGVTLHKCGR WEARMGQFLG KKYIYLGLFD NEVDAARAYD KAAIKCNGRE AVTNFEPSTY 300 EGEIIFDTST NEGNSHNLDL NLGICPPVGN DPKENEQQHH HFHSGPHDVH EGKSSGAENP 360 AGAIVSPAFE RLTENSDQPI LWRNVYPRFF PSEERDWAWQ MHGGRPMPPL LPAAASSGFS 420 FLATPPSAAI LPSNLTTPSF HFATPTATSA TPQIYIHMEE PPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526533 | 1e-80 | HQ526533.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GB2FT simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016727062.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | Q9SK03 | 1e-108 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A1U8MJS3 | 0.0 | A0A1U8MJS3_GOSHI; ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
STRING | Gorai.004G002100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5861 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-124 | related to AP2.7 |