PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G2488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 725aa MW: 78981.1 Da PI: 5.8099 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.9 | 7.7e-32 | 307 | 364 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k Gh_A08G2488 307 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPTCQVKKKVERSH-EGHITEIIYKGAHNHPK 364 7****************************************.***************85 PP | |||||||
2 | WRKY | 103.7 | 1e-32 | 519 | 577 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ Gh_A08G2488 519 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 577 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.101 | 301 | 365 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.3E-28 | 302 | 365 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-25 | 304 | 365 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-35 | 306 | 364 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-24 | 307 | 363 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.4E-37 | 504 | 579 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 511 | 579 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.664 | 514 | 579 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 519 | 578 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-25 | 520 | 577 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MAGIDDNVSL IGDWIPPTQS PRTFFTAMLG DDSGSKQVSK APLENKSEGL FLGENSDKMD 60 VNQGCEPSNE STFEQKSSTR AGLLERMAAR AGFNAPRLNT ENIRSTDTSL NPEIRSPYLT 120 IPPGLSPTTL LESPVFVSNS LAQPSPTTGK FSFIPNVNDR SCIPESRDKS EDNYFEDINA 180 SSFAFKPIAE SNSSFLLGAM SKVTPASLPQ QSFSNIEVSV QSENSQPSRS VDPRKLQQQN 240 SNMLSLQADF LRSSTEKDTG SNNSADQRVF DPVGGSVEHS LPLDEPQDEE GDQRVSGDCM 300 AGGAPSEDGY NWRKYGQKQV KGSEYPRSYY KCTHPTCQVK KKVERSHEGH ITEIIYKGAH 360 NHPKPPPNRR SSIGSSNPLI DMQLELPEQT GLQNGTDGEP VWATAQKGTV AATHDWTHEN 420 IEMTSSATIC PENGTAPTPN GTHIESGDAV DASSTFSNDE DEDDRGTHGS VSLGYDGEGD 480 ESESKRRKIE AYTTEMSGAT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR 540 SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARNSSHVNSA TSNTATALTS 600 SSVQTHAHRS EPSQLHNSMV RPTSFGPFTL PGRQQLGPSP GFSFGMNQPG LANLAMAGLG 660 PGQPKMPVLP LHPYMPHQRQ GNEMGFRLPK GEAKMEPMSD PGLDLSNNTS VYQQLMSRLP 720 LGPQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 307 | 580 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 307 | 580 | 8 | 78 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20925 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031100 | 0.0 | KF031100.1 Gossypium hirsutum WRKY transcription factor 62 (WRKY62) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016712627.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Refseq | XP_016712628.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1U8LDD7 | 0.0 | A0A1U8LDD7_GOSHI; probable WRKY transcription factor 2 | ||||
STRING | Gorai.004G034600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7954 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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