PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2484
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 304aa    MW: 31985.1 Da    PI: 6.6384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2484genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09153197554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Gh_A08G2484 153 HSIAERLRRERITERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 197
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-15146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.069148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7153197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANNTNEAPA ADDFLEQILG LPNFAPSETG LAGSDAGLAA TAAGAGAPMF LQLSSGDGAA  60
HIGGIGGGGG GAFHGQVFPL GLSLEQGKGG FLKPEEASGS GKRFRNGVVD DRASSVKNVF  120
HGQPMQATVS AAPHPPTMRP RVRARRGQAT DPHSIAERLR RERITERIRA LQELVPSVNK  180
TDRAVMLDEI VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT DIPLSSVEYE SGEGGRSHPA  240
WEKWSNDGTE QQVAKLMEEN VGAAMQFLQS KSLCIMPISL ATAIYHTQVP DSSSVVKPET  300
NPPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741419.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-137UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1U8NTX20.0A0A1U8NTX2_GOSHI; transcription factor UNE12-like
TrEMBLA0A2P5XNR30.0A0A2P5XNR3_GOSBA; Uncharacterized protein
STRINGGorai.004G075200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]