PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2055
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 285aa    MW: 32411.3 Da    PI: 5.9932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2055genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.97e-48181433128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                  pGfrFhPt+eelv +yL++kv++k+l++ e ike+diyk++P+dLpk+   +e+++yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s  +ge+
  Gh_A08G2055  18 PGFRFHPTEEELVGFYLRRKVDNKSLTI-ELIKEIDIYKYDPSDLPKTGMMGENDLYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVFSVrSGEA 114
                  9*************************99.89***************76667899*************************************9868899 PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  +glkktLv+y+g+a kg kt+W+mhe+rl
  Gh_A08G2055 115 IGLKKTLVYYHGSAGKGAKTEWMMHEFRL 143
                  ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-549164IPR003441NAC domain
PROSITE profilePS5100551.06816164IPR003441NAC domain
PfamPF023651.9E-2418143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNMFDGTTTT VDEGVPLPGF RFHPTEEELV GFYLRRKVDN KSLTIELIKE IDIYKYDPSD  60
LPKTGMMGEN DLYFFCKRGR KYRNSVRPNR VTGSGFWKAT GIDKPVFSVR SGEAIGLKKT  120
LVYYHGSAGK GAKTEWMMHE FRLPNPTLTA QEAEVWTICR IFKRNKKIKQ DSRQGAAKRA  180
STSNGKGVDG NKRCSVESNS HENYITIGSQ IIENYDDDDD DGEMVMDHVM NDESCRGEWY  240
HGELQRMASS SSPSSSFSTV NDFFTNANWD ELKSILDLDL DPFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4761651166NO APICAL MERISTEM PROTEIN
1ut4_B2e-4761651166NO APICAL MERISTEM PROTEIN
1ut7_A2e-4761651166NO APICAL MERISTEM PROTEIN
1ut7_B2e-4761651166NO APICAL MERISTEM PROTEIN
4dul_A2e-4761651166NAC domain-containing protein 19
4dul_B2e-4761651166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.36920.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472400.0KC847240.1 Gossypium hirsutum NAC domain protein NAC63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692102.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
SwissprotQ9SK555e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U8JPA70.0A0A1U8JPA7_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X2
STRINGGorai.004G270200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2481034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-83NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]