PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1914
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 347aa    MW: 39689.2 Da    PI: 9.9585
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1914genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31271328359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ve++ edp+++++tYeg+Hnh+
  Gh_A08G1914 271 DQYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVEKCLEDPSMLIVTYEGDHNHS 328
                  9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.0E-18222267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33257328IPR003657WRKY domain
PROSITE profilePS5081129.712264330IPR003657WRKY domain
SuperFamilySSF1182901.83E-26267328IPR003657WRKY domain
SMARTSM007741.4E-36269329IPR003657WRKY domain
PfamPF031062.3E-26271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDMEEVEEAN KAAIESCNKV LSHLSLSKDQ IQFSNLMIET DEAVFKFKKV VSLLSSNGRK  60
RRKFKKITSN LPENIFLETP NCTTTLSPKP LQVYPHPNLL DKRTSIEVDF RAQHQLQLTQ  120
NLFDPKNQNP SFQMMNSSLV HHHHHHHQQR VQFQQMKNQA ADMMFSKSNS GMNLKFDGSL  180
SPTMSFLSSL SMDHGSVNSL DGNSFHLIDI PRNFGQLSHQ SRRCSFRGED GNFKCGTSTT  240
KCHCSKRRKL RIKRTIKVPA ISNKVADIPP DQYSWRKYGQ KPIKGSPHPR GYYKCSSVRG  300
CPARKHVEKC LEDPSMLIVT YEGDHNHSRA RENHTVGLLQ ESLKVED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-192673271574Probable WRKY transcription factor 4
2lex_A2e-192673271574Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697940.0KF669794.1 Gossypium hirsutum WRKY transcription factor 23 (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634188.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU61e-103WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A1U8IBM30.0A0A1U8IBM3_GOSHI; probable WRKY transcription factor 74
STRINGGorai.004G247000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-94WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]