PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1765
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92488.5 Da    PI: 6.2429
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1765genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.2e-182583357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  Gh_A08G1765 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECsilsNIEPKQIKVWFQNRRCRDKQ 83
                 5679****************************************************996 PP
2START158.45.7e-501643722205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +ae +++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++  e+    + g  g+++l++++
  Gh_A08G1765 164 IAEGTLKEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNLEVFTMFRAGngGTIELIYTQ 260
                  678899****************************************************.7777777777*******8888888887777********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  + a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+l+Sg+li+++++g+s v++v+h +l++++++++lr+l++s+ + 
  Gh_A08G1765 261 MFAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLTSGYLIRSCEGGGSIVHIVDHLNLEAWSVPEVLRPLYESSKVV 358
                  ***********************************99999998999**************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++k++ a+l++ ++
  Gh_A08G1765 359 AQKMTIAALRYVRQ 372
                  *********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2082084IPR001356Homeobox domain
SMARTSM003897.3E-162288IPR001356Homeobox domain
SuperFamilySSF466894.71E-162486IPR009057Homeodomain-like
CDDcd000868.32E-162584No hitNo description
PfamPF000461.4E-152683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-182780IPR009057Homeodomain-like
CDDcd146861.12E-577116No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-481130No hitNo description
PROSITE profilePS5084824.946154382IPR002913START domain
CDDcd088751.00E-69158374No hitNo description
SMARTSM002345.2E-41163373IPR002913START domain
PfamPF018522.9E-47164372IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-17164365IPR023393START-like domain
SuperFamilySSF559611.92E-31164375No hitNo description
PfamPF086703.4E-47699842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAMAVAQHRE SSSGSNINKH LDNGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS  60
ILSNIEPKQI KVWFQNRRCR DKQKTEASRL QTVNRKLNAM NKLLMEENDR LQKQVSQLVN  120
ENGYMKQQLH TVNASTNDAS CDSVVTTPSH SLKDANNPAG LLSIAEGTLK EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNL  240
EVFTMFRAGN GGTIELIYTQ MFAPTTLAPA RDFWTLRYTT TLENGSLVVC ERSLSGSGAG  300
PNAAAAAQFV RAEMLTSGYL IRSCEGGGSI VHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
KMTIAALRYV RQIAQETSGE VVYGPGRQPA VLRTFSQRLS RGFNDAINGF NDDGWSIMNC  420
DGAEDVIIAI NSNKSLNSTP NPVNALPLLG GVLCAKASML IQNVSPAVLI RFLREHRSEW  480
ADFNVDAYSA ASLKAGSYAY PGMRPTRFTG SQIIMPLGHT IEHEELLEVV RLEGHSFAED  540
NAFLSRDIHL LQLCSGIDEN AVGGCSELLF APINEMFPDD APLLPSGFRV IPLDTKSSDT  600
QDSLATNRTL DLTSSLEPGP ATNHIAVDAP SCPNIRSVLT IAFQFPFDSN LEDNVANMAH  660
QYVRSIISSV QRIAIAISPS GLIPAVGPKQ SPSSPEALTL AHWICRSYSY HFGAELLRPE  720
RPVGDSLLKN LWQHQDAILC CSLKPLPVMI FANQAGLDML ETTLMALQDI SLDKIFDETG  780
RKTLCSDFAK LMQEGLAYLP AGICMSTMGR HVSYEQAVAW KVLEADESTV HCLAFSFVNW  840
SFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.38890.0boll| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}.
UniprotTISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016729039.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1U8MU040.0A0A1U8MU04_GOSHI; homeobox-leucine zipper protein REVOLUTA-like
STRINGGorai.004G229400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]