PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 35607.7 Da PI: 5.3694 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.4 | 1e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+++++ +G g+Wkt +++ g++R++k+c++rw +yl Gh_A08G1401 16 KGPWTPEEDEKLLEYINTHGHGNWKTLPKHAGLNRCGKSCRLRWANYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 7.8e-18 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+++eE+ l+++++ lG++ W++Ia +++ gRt++++k++w+++ Gh_A08G1401 69 RGRFSEEEERLIINLHSTLGNK-WSKIATYLP-GRTDNEIKNFWNTH 113 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.228 | 11 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.41E-32 | 15 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.9E-19 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-13 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 27.51 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-17 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-12 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGRSPCCSSD DAILKKGPWT PEEDEKLLEY INTHGHGNWK TLPKHAGLNR CGKSCRLRWA 60 NYLRPDIKRG RFSEEEERLI INLHSTLGNK WSKIATYLPG RTDNEIKNFW NTHIRKKLLN 120 MGLDPNTHKP RTDLNHLLNL TQLICAAQLG SLMNPWESSA LKVQADAAQL LQNLIQTLNT 180 NQLSTITAGL VGSQNSYPYE GLINGTSSLY ADEPAPVPQK FHLMSQTSSD QHQSQGVIDN 240 SWASFEGYES SDISDFLISE LVPESPETAT TSMNQMGDDK TNTNHGSTVS PDSSIFQAWE 300 KLMDDETDNS FWKDILE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 14 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624811.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
TrEMBL | A0A2P5WKX8 | 0.0 | A0A2P5WKX8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G183600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-84 | myb domain protein 9 |