PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1256
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 804aa    MW: 92815.8 Da    PI: 9.1471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1256genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.46e-28134187154
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 
                  ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg
  Gh_A08G1256 134 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEG 187
                  59***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29119187IPR003657WRKY domain
SuperFamilySSF1182908.37E-25126187IPR003657WRKY domain
PROSITE profilePS5081126.395129187IPR003657WRKY domain
SMARTSM007741.8E-31134190IPR003657WRKY domain
PfamPF031063.0E-21135187IPR003657WRKY domain
PfamPF039013.7E-44200561IPR005599GPI mannosyltransferase
PfamPF086133.0E-31653743IPR013922Cyclin PHO80-like
SuperFamilySSF479543.2E-11655744IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.102.6E-4660735IPR013763Cyclin-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000079Biological Processregulation of cyclin-dependent protein serine/threonine kinase activity
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006487Biological Processprotein N-linked glycosylation
GO:0030433Biological ProcessER-associated ubiquitin-dependent protein catabolic process
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0000009Molecular Functionalpha-1,6-mannosyltransferase activity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019901Molecular Functionprotein kinase binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MEGERGVPNY MLQVSFSSST PPPQAIHETG FLQFEENQVM SFLSPSQPLT TSPVSNTTNS  60
TTALRFITHN DQVVGTLDSI PKAVHDENCG SNAKDGNNNS WWRSSALEKN KVKVRRKLRE  120
PRFCFQTRSD VDVLDDGYKW RKYGQKVVKN SLHPRSYYRC THNNCRVKKR VERLSEDCRM  180
VITTYEGYDL LLGSIAAFYV FMVPYTKVEE SFNIQAMHDI LYHRHHLDNY DHLEFPGVVP  240
RTFIGAFLAS IFSSPIVLAV QLLHLPKIYS LIIVRLALGC IILSTLSFLR IQVRNKFGHQ  300
VEAFFVIFTA IQFHLLFYCS RALPNILAMG VVNLAYGHWL KGNFYTALNY LVFATTIFRC  360
DIVLLLCPLG LEFLLTKSIS FWRALKCCTV TTLLCIGFTV LVDSIMWKRF LWPEFEVFWF  420
NSVLNRSSEW GTHSIQWYFT SALPRSLLAA YPLFMLGVLL DRRLLPLVLP ALSFVVLYSK  480
LPHKELRFII SSVPIFNLSA AVAASRIYNN RKKSFWKFLN LIMLGLLLIS LGCTIITFMA  540
SYENYPSGHA LKELHQIGHL ANKSNELWVH IDPFSAMNGI SRFCENEWPW RYSKEEEIAL  600
EEFGQRNFTY LINEHRTIDG YKCLFYVNGF SRLRRQSGFP PIILVRNPNH AFYLDRIYKY  660
ANCSPSCFIV AYVYLDRFAQ RQPSLPINSF NVHRLLISSV MVAAKFMDDM YYNNAYYAKV  720
GGISTTEMNF LEVDFLFGLG FHLNVTPNTF HTYYTYLQRK MMMLQPPPII AESSLSFGKG  780
RSLKVVHLCF NEEESSHQKQ QLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22126187970Probable WRKY transcription factor 4
2lex_A1e-22126187970Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118KVRRKLR
Functional Description ? help Back to Top
Source Description
UniProtRequired for N-linked oligosaccharide assembly. Adds the eighth mannose residue in an alpha-1,6 linkage onto the dolichol-PP-oligosaccharide precursor dolichol-PP-Man(7)GlcNAc(2). {ECO:0000269|PubMed:20023196}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698080.0KF669808.1 Gossypium hirsutum WRKY transcription factor 25 (WRKY25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716671.10.0PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X2
SwissprotA8MR930.0ALG12_ARATH; Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
TrEMBLA0A1U8LQ030.0A0A1U8LQ03_GOSHI; Mannosyltransferase
STRINGGorai.004G166900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM967723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.18e-58WRKY family protein
Publications ? help Back to Top
  1. Hong Z, et al.
    Mutations of an alpha1,6 mannosyltransferase inhibit endoplasmic reticulum-associated degradation of defective brassinosteroid receptors in Arabidopsis.
    Plant Cell, 2009. 21(12): p. 3792-802
    [PMID:20023196]
  2. Hong Z, et al.
    Evolutionarily conserved glycan signal to degrade aberrant brassinosteroid receptors in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(28): p. 11437-42
    [PMID:22733738]
  3. Baer J,Taylor I,Walker JC
    Disrupting ER-associated protein degradation suppresses the abscission defect of a weak hae hsl2 mutant in Arabidopsis.
    J. Exp. Bot., 2016. 67(18): p. 5473-5484
    [PMID:27566817]