PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G1004

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 483aa MW: 54376.7 Da PI: 7.065

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G1004	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.6	3.7e-07	239	273	18	50
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqN 50 lFe+ ++yps ++ LA ++gL+ +qV++WF N Gh_A08G1004 239 LFEQflHPYPSDVDKHILACQTGLSRSQVSNWFIN 273 5776679**************************99 PP
2	BELL	112.4	2.4e-36	102	170	2	70
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 ++elqk+k+kLls+leeVd+rY++y++q+++v+ssFe++ag g+a +Y +A+ka+SrhFrcL+d+i++ Gh_A08G1004 102 FMELQKRKTKLLSMLEEVDRRYRHYRHQMKAVVSSFETAAGSGAASVYSDIASKAMSRHFRCLRDRIVG 170 589****************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.5E-49	40	170	IPR006563	POX domain
Pfam	PF07526	3.9E-44	45	169	IPR006563	POX domain
PROSITE profile	PS50071	10.544	218	281	IPR001356	Homeobox domain
SMART	SM00389	9.3E-6	221	285	IPR001356	Homeobox domain
CDD	cd00086	1.65E-9	221	282	No hit	No description
SuperFamily	SSF46689	8.13E-14	222	288	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-24	224	288	IPR009057	Homeodomain-like
Pfam	PF05920	1.8E-13	238	274	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MRFGSNAGDG FFEKAPNIQQ QQQQTIQSEF LEEAANLHHQ GQLQVASSKY LVPTQELLNE 60 FCSLGTTQVD ASEEKQIHKT KQCDNDNGAS SSRKQPLYSL NFMELQKRKT KLLSMLEEVD 120 RRYRHYRHQM KAVVSSFETA AGSGAASVYS DIASKAMSRH FRCLRDRIVG GIQATRKAMG 180 EKDPVAPGTT RGETPRLKII DKALRQQRCF QQMNMMENQP WRPQRGLPER SVSVLRAWLF 240 EQFLHPYPSD VDKHILACQT GLSRSQVSNW FINASVRLWK PMVEEMYMEE TKEHENNMAS 300 SDAVTTIDGD DNSGRPNPII LPTDQKPTPD QLLRIDSECL SSIVSSDPEK NDAKSAKTLQ 360 NQHFHQHHYQ KQSFETSGIM ELDFSSYSHH HTSGGASYNG SDYNANQSCF NGGGSVLLTL 420 GLQQHGGTGV SLAFSPVARS SIFYPRDHIE DCQPVQYSLL DGEAQHLSYR SLIGARLLHD 480 FNG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MRFGSNAGDG FFEKAPNIQQ QQQQTIQSEF LEEAANLHHQ GQLQVASSKY LVPTQELLNE  60
FCSLGTTQVD ASEEKQIHKT KQCDNDNGAS SSRKQPLYSL NFMELQKRKT KLLSMLEEVD  120
RRYRHYRHQM KAVVSSFETA AGSGAASVYS DIASKAMSRH FRCLRDRIVG GIQATRKAMG  180
EKDPVAPGTT RGETPRLKII DKALRQQRCF QQMNMMENQP WRPQRGLPER SVSVLRAWLF  240
EQFLHPYPSD VDKHILACQT GLSRSQVSNW FINASVRLWK PMVEEMYMEE TKEHENNMAS  300
SDAVTTIDGD DNSGRPNPII LPTDQKPTPD QLLRIDSECL SSIVSSDPEK NDAKSAKTLQ  360
NQHFHQHHYQ KQSFETSGIM ELDFSSYSHH HTSGGASYNG SDYNANQSCF NGGGSVLLTL  420
GLQQHGGTGV SLAFSPVARS SIFYPRDHIE DCQPVQYSLL DGEAQHLSYR SLIGARLLHD  480
FNG

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	72272181	1e-129

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625424.1	0.0	PREDICTED: homeobox protein BEL1 homolog isoform X1
Swissprot	Q38897	1e-131	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A2P5YW88	0.0	A0A2P5YW88_GOSBA; Uncharacterized protein
STRING	Gorai.004G139300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5866	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-118	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]