PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G0558

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 171aa MW: 19497.4 Da PI: 6.4184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G0558	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ Fs+ L H++ H Gh_A08G0558 33 YECVFCKRGFSTAQALGGHMNIH 55 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-5	28	59	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.38E-7	28	59	No hit	No description
Pfam	PF13912	1.6E-5	33	57	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.679	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEANHLEDSK SSSEETDKSE QSIDDMRTGR RSYECVFCKR GFSTAQALGG HMNIHRKDRV 60 KSRPSSVPIV SLSGNKADDK NYPSFRPYSY PPIQSYQPHY SIAPEVHVSY QAFLPVSGWG 120 FRLPPHTAQL FVDNSKHRNP FGEDDHENKK ADGYNDKEDE LDLELRLGHD P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016743175.1	1e-126	PREDICTED: transcriptional regulator SUPERMAN-like
Refseq	XP_017625010.1	1e-126	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1U8NWD5	1e-125	A0A1U8NWD5_GOSHI; transcriptional regulator SUPERMAN-like
STRING	Gorai.004G073500.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15373	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-13	C2H2 family protein